Variant report

Variant	rs9456618
Chromosome Location	chr6:161475332-161475333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161474692..161476468-chr6:161493026..161495144,2	K562	blood:
2	chr6:161474546..161476528-chr6:161476872..161479203,2	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10080366	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12181932	1.00[AMR][1000 genomes]
rs12333168	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13437252	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16892148	1.00[AMR][1000 genomes]
rs16892155	1.00[AMR][1000 genomes]
rs16892160	1.00[AMR][1000 genomes]
rs16892171	1.00[AMR][1000 genomes]
rs1822519	0.93[AFR][1000 genomes]
rs28542460	1.00[AMR][1000 genomes]
rs58963158	1.00[AMR][1000 genomes]
rs6455705	1.00[AMR][1000 genomes]
rs6928749	1.00[AMR][1000 genomes]
rs6930167	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934713	1.00[AMR][1000 genomes]
rs6937754	1.00[AMR][1000 genomes]
rs73022077	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7356869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754687	1.00[AMR][1000 genomes]
rs7767689	1.00[AMR][1000 genomes]
rs7767849	1.00[AMR][1000 genomes]
rs7775116	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9295135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456609	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456614	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456627	1.00[AMR][1000 genomes]
rs9456630	1.00[AMR][1000 genomes]
rs9458076	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458077	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458079	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458080	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458081	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458082	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458084	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458085	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458089	1.00[AFR][1000 genomes]
rs9458090	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9458115	1.00[AMR][1000 genomes]
rs9458125	1.00[AMR][1000 genomes]
rs9458127	1.00[AMR][1000 genomes]
rs9458131	1.00[AMR][1000 genomes]
rs9458133	1.00[AMR][1000 genomes]
rs9458134	1.00[AMR][1000 genomes]
rs9986548	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161435000-161490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:161443800-161478600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:161449000-161494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:161452800-161489400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
6	chr6:161455200-161495800	Weak transcription	Fetal Brain Male	brain
7	chr6:161456400-161501600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:161456800-161477000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:161456800-161485800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:161459400-161488800	Weak transcription	Brain Angular Gyrus	brain
11	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
12	chr6:161459800-161496600	Weak transcription	Fetal Kidney	kidney
13	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
14	chr6:161460000-161499200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:161460400-161487200	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:161460400-161488800	Weak transcription	Fetal Heart	heart
17	chr6:161460600-161495600	Weak transcription	HSMMtube	muscle
18	chr6:161462000-161478400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:161462800-161477400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:161462800-161478400	Weak transcription	Esophagus	oesophagus
21	chr6:161462800-161485800	Weak transcription	Aorta	Aorta
22	chr6:161462800-161497200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:161462800-161497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:161462800-161508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:161463000-161489000	Weak transcription	Fetal Brain Female	brain
26	chr6:161463000-161491600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:161463200-161488000	Weak transcription	Ovary	ovary
28	chr6:161463400-161491600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:161463600-161495600	Weak transcription	Pancreas	Pancrea
30	chr6:161463800-161499200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:161465400-161478200	Weak transcription	NHEK	skin
32	chr6:161469600-161476200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:161470400-161478400	Weak transcription	HMEC	breast
34	chr6:161470400-161495000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:161470600-161488800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:161470600-161492000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:161470600-161493800	Weak transcription	Fetal Thymus	thymus
38	chr6:161470600-161508000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr6:161470800-161478600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:161470800-161484400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:161470800-161485800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:161470800-161485800	Weak transcription	Gastric	stomach
43	chr6:161470800-161485800	Weak transcription	Thymus	Thymus
44	chr6:161470800-161491600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:161470800-161491600	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:161471000-161478200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:161471000-161481400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:161471000-161481600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:161471000-161485800	Weak transcription	Dnd41	blood
50	chr6:161471000-161487200	Weak transcription	NHDF-Ad	bronchial

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