Variant report

Variant	rs16893958
Chromosome Location	chr8:121372430-121372431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121371779..121374394-chr8:121390931..121392739,2	K562	blood:
2	chr8:121369184..121371852-chr8:121371968..121374570,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16893921	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs16893924	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs60062153	0.80[AFR][1000 genomes]
rs73315116	0.80[AFR][1000 genomes]
rs73315127	0.80[AFR][1000 genomes]
rs73315145	0.80[AFR][1000 genomes]
rs73315178	0.80[AFR][1000 genomes]
rs73315186	0.80[AFR][1000 genomes]
rs73315188	0.80[AFR][1000 genomes]
rs73331032	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
2	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
3	chr8:121346400-121377600	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:121360200-121376600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:121365200-121380600	Weak transcription	Gastric	stomach
6	chr8:121369600-121377400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:121369600-121406200	Weak transcription	Left Ventricle	heart
8	chr8:121370000-121372600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:121370400-121377400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:121370800-121373600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:121370800-121373600	Weak transcription	Fetal Brain Male	brain
12	chr8:121370800-121376600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:121371600-121375400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:121372000-121373000	Strong transcription	Aorta	Aorta
15	chr8:121372000-121373200	Strong transcription	Ovary	ovary
16	chr8:121372000-121374400	Strong transcription	Fetal Stomach	stomach
17	chr8:121372000-121375400	Strong transcription	Fetal Lung	lung
18	chr8:121372200-121374000	Strong transcription	Placenta	Placenta
19	chr8:121372400-121373200	Strong transcription	Fetal Muscle Leg	muscle
20	chr8:121372400-121383000	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links