Variant report

Variant	rs16893921
Chromosome Location	chr8:121341124-121341125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16893924	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs16893958	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs60062153	0.84[AFR][1000 genomes]
rs73315116	0.84[AFR][1000 genomes]
rs73315127	0.84[AFR][1000 genomes]
rs73315145	0.84[AFR][1000 genomes]
rs73315155	0.84[AFR][1000 genomes]
rs73315158	0.84[AFR][1000 genomes]
rs73315178	0.84[AFR][1000 genomes]
rs73315186	0.84[AFR][1000 genomes]
rs73315188	0.84[AFR][1000 genomes]
rs73331032	0.95[AFR][1000 genomes]
rs7834559	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121284800-121347800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:121323200-121344800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:121323800-121345800	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
6	chr8:121337000-121341200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:121337000-121344200	Weak transcription	Fetal Lung	lung
8	chr8:121337000-121345800	Weak transcription	Fetal Stomach	stomach
9	chr8:121337000-121348000	Weak transcription	Ovary	ovary
10	chr8:121337200-121341600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:121337400-121346800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:121338600-121344200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:121339200-121342200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:121339400-121341600	Enhancers	NHDF-Ad	bronchial
15	chr8:121339600-121342200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:121339800-121341400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:121339800-121346800	Weak transcription	Aorta	Aorta
18	chr8:121340400-121341200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:121340600-121341800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:121340800-121341200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:121340800-121341800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:121340800-121342400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr8:121341000-121341200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:121341000-121341800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:121341000-121342200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:121341000-121342800	Enhancers	Osteobl	bone
27	chr8:121341000-121347600	Weak transcription	Stomach Smooth Muscle	stomach

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