Variant report

Variant	rs16893924
Chromosome Location	chr8:121345800-121345801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:121345045..121347797-chr8:121350555..121352584,2	MCF-7	breast:
2	chr8:121343786..121346292-chr8:121352611..121354740,2	K562	blood:
3	chr8:120867087..120869733-chr8:121343952..121345915,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136982	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16893921	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs16893958	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs60062153	0.88[AFR][1000 genomes]
rs73315116	0.88[AFR][1000 genomes]
rs73315127	0.88[AFR][1000 genomes]
rs73315145	0.88[AFR][1000 genomes]
rs73315155	0.80[AFR][1000 genomes]
rs73315158	0.80[AFR][1000 genomes]
rs73315178	0.88[AFR][1000 genomes]
rs73315186	0.88[AFR][1000 genomes]
rs73315188	0.88[AFR][1000 genomes]
rs73331032	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121284800-121347800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:121323800-121345800	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
5	chr8:121337000-121345800	Weak transcription	Fetal Stomach	stomach
6	chr8:121337000-121348000	Weak transcription	Ovary	ovary
7	chr8:121337400-121346800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:121339800-121346800	Weak transcription	Aorta	Aorta
9	chr8:121341000-121347600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:121341800-121347600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:121342200-121347000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:121342400-121347400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr8:121343800-121349200	Enhancers	NHDF-Ad	bronchial
14	chr8:121344200-121348000	Strong transcription	Fetal Lung	lung
15	chr8:121344200-121361400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:121344800-121346400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:121344800-121349200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:121345000-121345800	Weak transcription	Placenta	Placenta
19	chr8:121345000-121347600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:121345200-121348000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:121345200-121348200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:121345400-121349000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:121345600-121346200	Enhancers	Adipose Nuclei	Adipose
24	chr8:121345600-121346400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr8:121345600-121348000	Enhancers	Osteobl	bone
26	chr8:121345800-121346000	Enhancers	NHLF	lung
27	chr8:121345800-121348600	Enhancers	Fetal Muscle Leg	muscle
28	chr8:121345800-121349200	Enhancers	Placenta	Placenta
29	chr8:121345800-121349200	Strong transcription	Fetal Stomach	stomach

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