Variant report

Variant	rs73315155
Chromosome Location	chr8:121455883-121455884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16893921	0.84[AFR][1000 genomes]
rs16893924	0.80[AFR][1000 genomes]
rs60062153	0.92[AFR][1000 genomes]
rs73315116	0.92[AFR][1000 genomes]
rs73315127	0.92[AFR][1000 genomes]
rs73315145	0.92[AFR][1000 genomes]
rs73315158	1.00[AFR][1000 genomes]
rs73315178	0.92[AFR][1000 genomes]
rs73315186	0.92[AFR][1000 genomes]
rs73315188	0.92[AFR][1000 genomes]
rs73331032	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv470235	chr8:121437222-121526747	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121402000-121456400	Weak transcription	Small Intestine	intestine
2	chr8:121404600-121456000	Weak transcription	Colonic Mucosa	Colon
3	chr8:121405000-121456000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:121410200-121456400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:121410200-121456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:121410600-121456600	Weak transcription	Gastric	stomach
7	chr8:121410600-121456600	Weak transcription	Spleen	Spleen
8	chr8:121411000-121456000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:121412800-121456000	Weak transcription	Fetal Brain Male	brain
10	chr8:121415800-121456400	Weak transcription	Esophagus	oesophagus
11	chr8:121417000-121456000	Weak transcription	Brain Substantia Nigra	brain
12	chr8:121417000-121456400	Weak transcription	Fetal Kidney	kidney
13	chr8:121417200-121456000	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:121417200-121456000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:121417800-121456400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:121423600-121456000	Weak transcription	Fetal Intestine Small	intestine
17	chr8:121423600-121456000	Weak transcription	Ovary	ovary
18	chr8:121423600-121456400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:121423600-121456400	Weak transcription	Lung	lung
20	chr8:121423800-121456000	Weak transcription	Fetal Stomach	stomach
21	chr8:121424800-121456000	Weak transcription	Brain Anterior Caudate	brain
22	chr8:121425200-121456200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:121437000-121456000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr8:121443200-121456000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:121443600-121456000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr8:121444400-121456000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr8:121447600-121456400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr8:121449200-121456600	Weak transcription	Stomach Mucosa	stomach
29	chr8:121450600-121456400	Weak transcription	Pancreas	Pancrea
30	chr8:121450600-121456600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:121450800-121456400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:121450800-121456400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr8:121452000-121456200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr8:121452800-121456000	Weak transcription	Psoas Muscle	Psoas
35	chr8:121453600-121456400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:121453600-121456400	Weak transcription	Fetal Muscle Leg	muscle
37	chr8:121454000-121456400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:121454000-121456600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr8:121454400-121456000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr8:121454400-121456000	Enhancers	Primary T cells from cord blood	blood
41	chr8:121454400-121456000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:121454400-121456000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr8:121454600-121456000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr8:121454600-121456200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr8:121454600-121456200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr8:121454800-121456600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr8:121455000-121456000	Enhancers	Primary hematopoietic stem cells	blood
48	chr8:121455000-121456000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr8:121455000-121456000	Weak transcription	NH-A	brain
50	chr8:121455000-121456200	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links