Variant report

Variant	rs73315116
Chromosome Location	chr8:121399766-121399767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16893921	0.84[AFR][1000 genomes]
rs16893924	0.88[AFR][1000 genomes]
rs16893958	0.80[AFR][1000 genomes]
rs60062153	1.00[AFR][1000 genomes]
rs73315127	1.00[AFR][1000 genomes]
rs73315145	1.00[AFR][1000 genomes]
rs73315155	0.92[AFR][1000 genomes]
rs73315158	0.92[AFR][1000 genomes]
rs73315178	1.00[AFR][1000 genomes]
rs73315186	1.00[AFR][1000 genomes]
rs73315188	1.00[AFR][1000 genomes]
rs73317229	0.84[AFR][1000 genomes]
rs73331032	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121369600-121406200	Weak transcription	Left Ventricle	heart
2	chr8:121391200-121406600	Weak transcription	NHLF	lung
3	chr8:121391400-121407000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:121392200-121402400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:121392800-121403000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:121396600-121402600	Weak transcription	Fetal Stomach	stomach
7	chr8:121396600-121407200	Weak transcription	HSMM	muscle
8	chr8:121396800-121416800	Weak transcription	Aorta	Aorta
9	chr8:121397000-121407000	Weak transcription	HSMMtube	muscle
10	chr8:121397000-121407200	Weak transcription	Fetal Heart	heart
11	chr8:121397200-121404800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:121397200-121404800	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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