Variant report

Variant	rs16894252
Chromosome Location	chr6:28703488-28703489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27774714..27777094-chr6:28701466..28704120,2	K562	blood:
2	chr6:28701813..28704465-chr6:28720205..28723280,3	K562	blood:
3	chr6:27869505..27871710-chr6:28702327..28704726,2	K562	blood:
4	chr6:28699538..28701442-chr6:28701623..28703902,3	K562	blood:
5	chr6:28694465..28699409-chr6:28701823..28706376,12	K562	blood:
6	chr6:28702781..28705852-chr6:28730775..28732422,3	K562	blood:
7	chr6:28687230..28688788-chr6:28703405..28705827,2	K562	blood:
8	chr6:28701062..28703950-chr6:33822430..33824102,2	MCF-7	breast:
9	chr6:28703036..28704771-chr6:28709650..28711944,2	MCF-7	breast:
10	chr6:28701328..28705041-chr6:28730739..28732422,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000217862	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000237425	Chromatin interaction
ENSG00000185130	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16894249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394128	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394129	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893969	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3869044	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57103404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57517815	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73744511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746328	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7757889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764322	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764775	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764909	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767180	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28702000-28703800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:28702200-28705600	Active TSS	A549	lung
3	chr6:28702400-28703800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:28702800-28703800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:28702800-28704000	Active TSS	K562	blood
6	chr6:28703000-28703600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:28703000-28703600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chr6:28703000-28703600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:28703000-28703600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:28703000-28703800	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:28703000-28704000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:28703000-28704000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:28703000-28704000	Flanking Active TSS	HMEC	breast
14	chr6:28703000-28705200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr6:28703200-28703600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:28703200-28703800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr6:28703200-28703800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:28703200-28703800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:28703200-28703800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:28703200-28704000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
21	chr6:28703200-28704000	Active TSS	H9 Cell Line	embryonic stem cell
22	chr6:28703200-28704000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr6:28703400-28703600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr6:28703400-28703600	Flanking Active TSS	NHEK	skin
25	chr6:28703400-28703600	Bivalent/Poised TSS	Osteobl	bone
26	chr6:28703400-28703800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:28703400-28703800	Bivalent/Poised TSS	HepG2	liver

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