Variant report

Variant	rs2394128
Chromosome Location	chr6:28718864-28718865
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16894249	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894252	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3869044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57103404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57517815	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73744511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746328	1.00[ASN][1000 genomes]
rs7757889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767180	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28715400-28725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28715600-28724800	Weak transcription	HMEC	breast
3	chr6:28716200-28719400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:28716400-28719000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:28716600-28720200	Weak transcription	Hela-S3	cervix
6	chr6:28716600-28720400	Weak transcription	A549	lung
7	chr6:28718800-28720400	Active TSS	K562	blood
8	chr6:28718800-28724600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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