Variant report

Variant	rs7757889
Chromosome Location	chr6:28791612-28791613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16894249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894252	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394128	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394129	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893969	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3869044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57103404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57517815	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906225	1.00[ASN][1000 genomes]
rs73744511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746328	1.00[ASN][1000 genomes]
rs7764322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764775	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767180	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28786000-28792200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28790800-28791800	Enhancers	Placenta	Placenta
3	chr6:28791000-28792000	Active TSS	A549	lung
4	chr6:28791200-28794000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:28791600-28792200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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