Variant report

Variant	rs6900037
Chromosome Location	chr6:28735098-28735099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16894249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894252	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394128	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394129	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893969	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3869044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57103404	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57517815	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906225	1.00[ASN][1000 genomes]
rs73744511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746328	1.00[ASN][1000 genomes]
rs7757889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764775	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767180	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28734200-28735400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
3	chr6:28734400-28735400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:28734400-28735600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr6:28734600-28735400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr6:28734600-28735400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr6:28734800-28735600	Enhancers	K562	blood
8	chr6:28735000-28735200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:28735000-28735200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr6:28735000-28735200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr6:28735000-28735400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links