Variant report

Variant	rs3869044
Chromosome Location	chr6:28716114-28716115
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28685695..28690739-chr6:28709794..28719692,17	K562	blood:
2	chr6:28690957..28693592-chr6:28715532..28717190,2	K562	blood:
3	chr6:28715243..28717665-chr6:28720660..28723020,3	MCF-7	breast:
4	chr6:28675937..28678436-chr6:28714378..28717969,3	K562	blood:
5	chr6:27560152..27562900-chr6:28715549..28717321,2	K562	blood:
6	chr6:28715456..28717340-chr6:28801713..28804501,2	K562	blood:
7	chr6:28709763..28712235-chr6:28715610..28717205,2	K562	blood:
8	chr6:28715045..28717732-chr6:28737419..28740778,4	K562	blood:
9	chr6:28638654..28641368-chr6:28714122..28716293,2	K562	blood:
10	chr6:28712043..28717130-chr6:28723838..28729658,8	K562	blood:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16894249	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894252	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57103404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57517815	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73744511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746328	1.00[ASN][1000 genomes]
rs7757889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767180	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28714400-28716200	Active TSS	A549	lung
2	chr6:28714800-28716200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:28714800-28716200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:28715000-28716200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:28715200-28716200	Active TSS	Hela-S3	cervix
6	chr6:28715400-28716400	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:28715400-28725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:28715600-28724800	Weak transcription	HMEC	breast
9	chr6:28715800-28716200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:28715800-28716200	Enhancers	NHEK	skin
11	chr6:28715800-28716600	Bivalent Enhancer	HepG2	liver
12	chr6:28716000-28716200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:28716000-28716400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:28716000-28716400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr6:28716000-28716400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
16	chr6:28716000-28716400	Flanking Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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