Variant report

Variant	rs16897879
Chromosome Location	chr6:165858854-165858855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16897864	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2146321	0.83[AMR][1000 genomes]
rs2181285	0.83[AMR][1000 genomes]
rs2322928	0.83[AMR][1000 genomes]
rs2839898	0.83[AMR][1000 genomes]
rs56105110	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6919758	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6926051	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930290	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788384	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788386	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788391	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788392	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788394	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788396	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788397	0.83[AMR][1000 genomes]
rs73788399	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788401	0.83[AMR][1000 genomes]
rs73788402	0.83[AMR][1000 genomes]
rs7744995	0.83[AMR][1000 genomes]
rs7749858	0.83[AMR][1000 genomes]
rs7750328	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750334	0.83[AMR][1000 genomes]
rs7754318	0.83[AMR][1000 genomes]
rs7761949	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv464136	chr6:165837800-165862892	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv605252	chr6:165837800-165862892	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165806400-165862000	Weak transcription	Right Ventricle	heart
2	chr6:165831000-165862800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:165836000-165873200	Weak transcription	Fetal Brain Male	brain
4	chr6:165854000-165861200	Weak transcription	HSMM	muscle
5	chr6:165854800-165881800	Weak transcription	Hela-S3	cervix
6	chr6:165855200-165859800	Weak transcription	Fetal Lung	lung
7	chr6:165855800-165859400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:165856000-165859000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:165857200-165859800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:165857400-165859000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:165857400-165869000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:165857400-165873600	Weak transcription	Brain Germinal Matrix	brain
13	chr6:165857400-165886200	Weak transcription	Left Ventricle	heart
14	chr6:165857400-165919400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:165857600-165864600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:165857800-165869000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:165858000-165860600	Weak transcription	A549	lung
18	chr6:165858800-165859000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:165858800-165859400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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