Variant report

Variant	rs73788401
Chromosome Location	chr6:165878718-165878719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs16897864	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16897879	0.83[AMR][1000 genomes]
rs16897897	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2146320	0.85[AFR][1000 genomes]
rs2146321	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2181285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2322927	0.85[AFR][1000 genomes]
rs2322928	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2839898	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56105110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919758	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926051	0.83[AMR][1000 genomes]
rs6930290	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786603	0.83[AMR][1000 genomes]
rs73786604	0.83[AMR][1000 genomes]
rs73788384	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788386	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788389	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788390	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788391	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788392	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788394	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788396	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788397	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788399	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7453600	0.85[AFR][1000 genomes]
rs7738620	0.83[AMR][1000 genomes]
rs7738768	0.83[AMR][1000 genomes]
rs7744995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750328	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7750334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761949	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768515	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv818468	chr6:165877431-165893347	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv516359	chr6:165877431-165901124	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv528284	chr6:165877431-165909462	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2762631	chr6:165877723-165893758	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165854800-165881800	Weak transcription	Hela-S3	cervix
2	chr6:165857400-165886200	Weak transcription	Left Ventricle	heart
3	chr6:165857400-165919400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:165863200-165882000	Weak transcription	HSMM	muscle
5	chr6:165874800-165883000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:165877800-165896000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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