Variant report

Variant	rs73788394
Chromosome Location	chr6:165862799-165862800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16897864	0.83[AMR][1000 genomes]
rs16897879	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16897897	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2146321	1.00[AMR][1000 genomes]
rs2181285	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2322928	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2839898	1.00[AMR][1000 genomes]
rs56105110	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926051	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6930290	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786603	0.83[AMR][1000 genomes]
rs73786604	0.83[AMR][1000 genomes]
rs73788384	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788386	0.83[AMR][1000 genomes]
rs73788389	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788390	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788391	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788392	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788397	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788399	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788401	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788402	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738620	0.83[AMR][1000 genomes]
rs7738768	0.83[AMR][1000 genomes]
rs7744995	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749858	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750328	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7750334	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754318	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768515	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv464136	chr6:165837800-165862892	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv605252	chr6:165837800-165862892	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165831000-165862800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:165836000-165873200	Weak transcription	Fetal Brain Male	brain
3	chr6:165854800-165881800	Weak transcription	Hela-S3	cervix
4	chr6:165857400-165869000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:165857400-165873600	Weak transcription	Brain Germinal Matrix	brain
6	chr6:165857400-165886200	Weak transcription	Left Ventricle	heart
7	chr6:165857400-165919400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:165857600-165864600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:165857800-165869000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:165859000-165867200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:165859000-165873400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:165861200-165863200	Strong transcription	HSMM	muscle
13	chr6:165861600-165863200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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