Variant report

Variant	rs73786603
Chromosome Location	chr6:165882422-165882423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2146321	0.83[AMR][1000 genomes]
rs2181285	0.83[AMR][1000 genomes]
rs2322928	0.83[AMR][1000 genomes]
rs2839898	0.83[AMR][1000 genomes]
rs56105110	0.83[AMR][1000 genomes]
rs6919758	0.83[AMR][1000 genomes]
rs6930290	0.83[AMR][1000 genomes]
rs73786604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788392	0.83[AMR][1000 genomes]
rs73788394	0.83[AMR][1000 genomes]
rs73788396	0.83[AMR][1000 genomes]
rs73788397	0.83[AMR][1000 genomes]
rs73788399	0.83[AMR][1000 genomes]
rs73788401	0.83[AMR][1000 genomes]
rs73788402	0.83[AMR][1000 genomes]
rs7738620	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738768	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744995	0.83[AMR][1000 genomes]
rs7749858	0.83[AMR][1000 genomes]
rs7750334	0.83[AMR][1000 genomes]
rs7754318	0.83[AMR][1000 genomes]
rs7761949	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv818468	chr6:165877431-165893347	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv516359	chr6:165877431-165901124	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv528284	chr6:165877431-165909462	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2762631	chr6:165877723-165893758	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165857400-165886200	Weak transcription	Left Ventricle	heart
2	chr6:165857400-165919400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:165874800-165883000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:165877800-165896000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:165881400-165895400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:165881800-165883400	Enhancers	Hela-S3	cervix
7	chr6:165882000-165883000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:165882000-165883400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:165882200-165882600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:165882400-165899400	Weak transcription	HSMM	muscle

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