Variant report

Variant	rs73788399
Chromosome Location	chr6:165872805-165872806
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16897864	0.83[AMR][1000 genomes]
rs16897879	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16897897	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2146321	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2181285	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2322928	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2839898	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56105110	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919758	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926051	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6930290	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73786603	0.83[AMR][1000 genomes]
rs73786604	0.83[AMR][1000 genomes]
rs73788384	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788386	0.83[AMR][1000 genomes]
rs73788389	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788390	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788391	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788392	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788397	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788401	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788402	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7738620	0.83[AMR][1000 genomes]
rs7738768	0.83[AMR][1000 genomes]
rs7744995	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749858	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750328	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7750334	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754318	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761949	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768515	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165836000-165873200	Weak transcription	Fetal Brain Male	brain
2	chr6:165854800-165881800	Weak transcription	Hela-S3	cervix
3	chr6:165857400-165873600	Weak transcription	Brain Germinal Matrix	brain
4	chr6:165857400-165886200	Weak transcription	Left Ventricle	heart
5	chr6:165857400-165919400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:165859000-165873400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:165863200-165882000	Weak transcription	HSMM	muscle
8	chr6:165870000-165874800	Weak transcription	Right Atrium	heart
9	chr6:165870000-165876800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:165870200-165873200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:165870600-165873400	Enhancers	Fetal Lung	lung
12	chr6:165872000-165873600	Weak transcription	Brain Anterior Caudate	brain
13	chr6:165872200-165874000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:165872400-165873400	Enhancers	Fetal Kidney	kidney
15	chr6:165872600-165873600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:165872600-165873800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:165872800-165873000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr6:165872800-165873800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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