Variant report

Variant	rs2839898
Chromosome Location	chr6:165876440-165876441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs16897864	0.83[AMR][1000 genomes]
rs16897879	0.83[AMR][1000 genomes]
rs16897897	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2146320	0.94[AFR][1000 genomes]
rs2146321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2181285	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2322927	0.94[AFR][1000 genomes]
rs2322928	1.00[AMR][1000 genomes]
rs56105110	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919758	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926051	0.83[AMR][1000 genomes]
rs6930290	1.00[AMR][1000 genomes]
rs73786603	0.83[AMR][1000 genomes]
rs73786604	0.83[AMR][1000 genomes]
rs73788384	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73788386	0.83[AMR][1000 genomes]
rs73788389	0.83[AMR][1000 genomes]
rs73788390	0.83[AMR][1000 genomes]
rs73788391	0.83[AMR][1000 genomes]
rs73788392	1.00[AMR][1000 genomes]
rs73788394	1.00[AMR][1000 genomes]
rs73788396	1.00[AMR][1000 genomes]
rs73788397	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788399	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788401	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788402	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7453600	0.94[AFR][1000 genomes]
rs7738620	0.83[AMR][1000 genomes]
rs7738768	0.83[AMR][1000 genomes]
rs7744995	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749858	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7750328	0.83[AMR][1000 genomes]
rs7750334	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754318	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761949	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768515	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165854800-165881800	Weak transcription	Hela-S3	cervix
2	chr6:165857400-165886200	Weak transcription	Left Ventricle	heart
3	chr6:165857400-165919400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:165863200-165882000	Weak transcription	HSMM	muscle
5	chr6:165870000-165876800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:165874800-165883000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:165875800-165877400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:165876400-165876800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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