Variant report

Variant	rs16905637
Chromosome Location	chr11:8770113-8770114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10500706	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16905630	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16905739	0.94[EUR][1000 genomes]
rs16905828	0.86[YRI][hapmap];0.94[AFR][1000 genomes]
rs16905855	0.86[YRI][hapmap];0.94[AFR][1000 genomes]
rs3862351	1.00[CEU][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57208947	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59504764	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60812444	0.94[AFR][1000 genomes]
rs61359613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74053139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74053168	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74053199	0.94[AFR][1000 genomes]
rs74053200	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7937844	0.86[YRI][hapmap];0.94[AFR][1000 genomes]
rs7938235	0.86[YRI][hapmap];0.94[AFR][1000 genomes]
rs7949147	0.88[YRI][hapmap];0.97[AFR][1000 genomes]
rs7950178	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:8752600-8775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:8754600-8771000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:8754600-8778400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:8755200-8771600	Weak transcription	Hela-S3	cervix
8	chr11:8755200-8774200	Weak transcription	Brain Angular Gyrus	brain
9	chr11:8755200-8778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:8755400-8770600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:8755600-8777200	Weak transcription	Psoas Muscle	Psoas
12	chr11:8755800-8770200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:8755800-8780800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:8756000-8776000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:8757400-8777400	Weak transcription	Adipose Nuclei	Adipose
16	chr11:8757800-8777800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:8758400-8770600	Weak transcription	Lung	lung
18	chr11:8758600-8770800	Weak transcription	Esophagus	oesophagus
19	chr11:8759800-8775600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:8761400-8771800	Weak transcription	Brain Substantia Nigra	brain
21	chr11:8762000-8770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:8762000-8778200	Weak transcription	Aorta	Aorta
23	chr11:8762200-8772200	Weak transcription	Spleen	Spleen
24	chr11:8762600-8770800	Weak transcription	Gastric	stomach
25	chr11:8762800-8778000	Weak transcription	Ovary	ovary
26	chr11:8763000-8770600	Weak transcription	Right Ventricle	heart
27	chr11:8763400-8781000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:8765200-8772400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:8765400-8772400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr11:8766000-8772400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:8766400-8772400	Strong transcription	Placenta	Placenta
32	chr11:8766400-8772600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:8766600-8771400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:8767000-8779800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:8767200-8772600	Genic enhancers	Stomach Smooth Muscle	stomach
36	chr11:8767400-8770400	Weak transcription	HSMM	muscle
37	chr11:8767400-8771800	Weak transcription	HSMMtube	muscle
38	chr11:8767600-8770200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:8767600-8770600	Enhancers	Duodenum Mucosa	Duodenum
40	chr11:8767600-8770600	Weak transcription	Pancreas	Pancrea
41	chr11:8767600-8771000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:8767600-8772400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:8767600-8772400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:8767800-8771600	Weak transcription	HMEC	breast
45	chr11:8767800-8777400	Weak transcription	NH-A	brain
46	chr11:8768200-8770600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:8768200-8771200	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr11:8768200-8772200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:8768400-8770800	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr11:8768400-8772000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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