The 2.0 version of rSNPBase

Variant report

Variant rs16905739
Chromosome Location chr11:8783918-8783919
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:8772400-8787000 Weak transcription Brain Hippocampus Middle brain
2 chr11:8772400-8788400 Weak transcription Hela-S3 cervix
3 chr11:8777400-8784000 Enhancers Skeletal Muscle Female skeletal muscle
4 chr11:8777400-8784200 Enhancers Fetal Intestine Large intestine
5 chr11:8777400-8784200 Enhancers Left Ventricle heart
6 chr11:8777400-8795800 Enhancers Rectal Smooth Muscle rectum
7 chr11:8777600-8787800 Weak transcription Esophagus oesophagus
8 chr11:8777800-8785400 Enhancers Skeletal Muscle Male skeletal muscle
9 chr11:8778000-8784000 Enhancers Duodenum Mucosa Duodenum
10 chr11:8779000-8784400 Weak transcription Muscle Satellite Cultured Cells --
11 chr11:8779200-8784200 Genic enhancers Fetal Stomach stomach
12 chr11:8779200-8785000 Enhancers Breast Myoepithelial Primary Cells Breast
13 chr11:8779200-8785000 Weak transcription HSMMtube muscle
14 chr11:8779200-8786600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr11:8779400-8786600 Weak transcription Placenta Amnion Placenta Amnion
16 chr11:8779400-8787000 Weak transcription NHEK skin
17 chr11:8779600-8784000 Enhancers Right Ventricle heart
18 chr11:8779600-8786600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr11:8779600-8799600 Weak transcription Fetal Brain Male brain
20 chr11:8779800-8784000 Enhancers Spleen Spleen
21 chr11:8779800-8784800 Weak transcription HSMM muscle
22 chr11:8780000-8786600 Weak transcription HMEC breast
23 chr11:8780000-8792400 Weak transcription HepG2 liver
24 chr11:8780200-8784000 Enhancers Right Atrium heart
25 chr11:8780400-8784000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
26 chr11:8780400-8784400 Enhancers Ovary ovary
27 chr11:8780600-8784000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
28 chr11:8780800-8784000 Enhancers Pancreas Pancrea
29 chr11:8781000-8786800 Weak transcription iPS-15b Cell Line embryonic stem cell
30 chr11:8781200-8784000 Enhancers Fetal Adrenal Gland Adrenal Gland
31 chr11:8781200-8784000 Enhancers Stomach Mucosa stomach
32 chr11:8781400-8786600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr11:8781400-8787800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
34 chr11:8781400-8794600 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr11:8781600-8785800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr11:8781600-8786600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr11:8781800-8784000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
38 chr11:8781800-8784200 Enhancers Fetal Muscle Leg muscle
39 chr11:8781800-8786600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr11:8781800-8786600 Weak transcription NHDF-Ad bronchial
41 chr11:8782000-8787200 Weak transcription Fetal Muscle Trunk muscle
42 chr11:8782000-8791600 Enhancers Colon Smooth Muscle Colon
43 chr11:8782200-8784000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr11:8782200-8786800 Weak transcription Aorta Aorta
45 chr11:8782400-8784000 Enhancers Brain Substantia Nigra brain
46 chr11:8782400-8784000 Enhancers Lung lung
47 chr11:8782400-8785800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr11:8782600-8784000 Enhancers Small Intestine intestine
49 chr11:8782800-8784000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr11:8782800-8784000 Enhancers Brain Angular Gyrus brain

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Last update: Aug 31, 2015