Variant report

Variant	rs74053139
Chromosome Location	chr11:8767748-8767749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8755358..8756996-chr11:8767544..8769527,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10500706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16905630	1.00[EUR][1000 genomes]
rs16905637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16905739	0.94[EUR][1000 genomes]
rs16905828	0.94[AFR][1000 genomes]
rs16905855	0.94[AFR][1000 genomes]
rs3862351	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57208947	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59504764	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60812444	0.94[AFR][1000 genomes]
rs61359613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74053168	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74053199	0.94[AFR][1000 genomes]
rs74053200	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7937844	0.94[AFR][1000 genomes]
rs7938235	0.94[AFR][1000 genomes]
rs7949147	0.97[AFR][1000 genomes]
rs7950178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:8752600-8769800	Weak transcription	Colonic Mucosa	Colon
4	chr11:8752600-8775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:8754600-8771000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:8754600-8778400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:8755200-8771600	Weak transcription	Hela-S3	cervix
9	chr11:8755200-8774200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:8755200-8778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:8755400-8770600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:8755600-8768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:8755600-8777200	Weak transcription	Psoas Muscle	Psoas
14	chr11:8755800-8770200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:8755800-8780800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:8756000-8768400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:8756000-8768400	Weak transcription	Stomach Mucosa	stomach
18	chr11:8756000-8776000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:8756200-8767800	Weak transcription	Small Intestine	intestine
20	chr11:8757400-8777400	Weak transcription	Adipose Nuclei	Adipose
21	chr11:8757800-8777800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:8758400-8768200	Weak transcription	HepG2	liver
23	chr11:8758400-8770600	Weak transcription	Lung	lung
24	chr11:8758600-8770800	Weak transcription	Esophagus	oesophagus
25	chr11:8759800-8775600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:8760800-8769000	Weak transcription	Liver	Liver
27	chr11:8761200-8768800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:8761400-8769400	Weak transcription	NHLF	lung
29	chr11:8761400-8771800	Weak transcription	Brain Substantia Nigra	brain
30	chr11:8762000-8770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:8762000-8778200	Weak transcription	Aorta	Aorta
32	chr11:8762200-8772200	Weak transcription	Spleen	Spleen
33	chr11:8762600-8770800	Weak transcription	Gastric	stomach
34	chr11:8762800-8778000	Weak transcription	Ovary	ovary
35	chr11:8763000-8770600	Weak transcription	Right Ventricle	heart
36	chr11:8763200-8768800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:8763400-8769800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:8763400-8769800	Weak transcription	Right Atrium	heart
39	chr11:8763400-8770000	Weak transcription	Brain Anterior Caudate	brain
40	chr11:8763400-8781000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:8764200-8768000	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:8765200-8767800	Enhancers	HMEC	breast
43	chr11:8765200-8772400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:8765400-8772400	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:8765600-8767800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:8766000-8769000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:8766000-8769000	Enhancers	NHDF-Ad	bronchial
48	chr11:8766000-8772400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:8766400-8772400	Strong transcription	Placenta	Placenta
50	chr11:8766400-8772600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

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