Variant report

Variant	rs74053168
Chromosome Location	chr11:8782195-8782196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10500706	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16905630	1.00[EUR][1000 genomes]
rs16905637	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16905739	0.94[EUR][1000 genomes]
rs16905828	0.89[AFR][1000 genomes]
rs16905855	0.89[AFR][1000 genomes]
rs3862351	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57208947	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59504764	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60812444	0.89[AFR][1000 genomes]
rs61359613	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74053139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74053199	0.89[AFR][1000 genomes]
rs74053200	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7937844	0.89[AFR][1000 genomes]
rs7938235	0.89[AFR][1000 genomes]
rs7949147	0.89[AFR][1000 genomes]
rs7950178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8772200-8782600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:8772400-8782800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:8772400-8787000	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:8772400-8788400	Weak transcription	Hela-S3	cervix
6	chr11:8775400-8782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:8777200-8782200	Enhancers	Psoas Muscle	Psoas
8	chr11:8777400-8783400	Enhancers	NHLF	lung
9	chr11:8777400-8784000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr11:8777400-8784200	Enhancers	Fetal Intestine Large	intestine
11	chr11:8777400-8784200	Enhancers	Left Ventricle	heart
12	chr11:8777400-8795800	Enhancers	Rectal Smooth Muscle	rectum
13	chr11:8777600-8787800	Weak transcription	Esophagus	oesophagus
14	chr11:8777800-8785400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:8778000-8784000	Enhancers	Duodenum Mucosa	Duodenum
16	chr11:8778400-8782600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr11:8779000-8783000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:8779000-8784400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:8779200-8784200	Genic enhancers	Fetal Stomach	stomach
20	chr11:8779200-8785000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:8779200-8785000	Weak transcription	HSMMtube	muscle
22	chr11:8779200-8786600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:8779400-8782400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr11:8779400-8786600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr11:8779400-8787000	Weak transcription	NHEK	skin
26	chr11:8779600-8784000	Enhancers	Right Ventricle	heart
27	chr11:8779600-8786600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:8779600-8799600	Weak transcription	Fetal Brain Male	brain
29	chr11:8779800-8784000	Enhancers	Spleen	Spleen
30	chr11:8779800-8784800	Weak transcription	HSMM	muscle
31	chr11:8780000-8782600	Weak transcription	Small Intestine	intestine
32	chr11:8780000-8782600	Weak transcription	NH-A	brain
33	chr11:8780000-8786600	Weak transcription	HMEC	breast
34	chr11:8780000-8792400	Weak transcription	HepG2	liver
35	chr11:8780200-8783000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:8780200-8784000	Enhancers	Right Atrium	heart
37	chr11:8780400-8783000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:8780400-8784000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:8780400-8784400	Enhancers	Ovary	ovary
40	chr11:8780600-8783400	Enhancers	Brain Anterior Caudate	brain
41	chr11:8780600-8784000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:8780800-8784000	Enhancers	Pancreas	Pancrea
43	chr11:8781000-8783000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:8781000-8783200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:8781000-8783400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr11:8781000-8783800	Enhancers	Fetal Kidney	kidney
47	chr11:8781000-8783800	Enhancers	Placenta	Placenta
48	chr11:8781000-8786800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:8781200-8782200	Enhancers	Aorta	Aorta
50	chr11:8781200-8782400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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