Variant report

Variant	rs3862351
Chromosome Location	chr11:8796959-8796960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8719301..8720930-chr11:8796904..8798885,2	K562	blood:

Variant related genes	Relation type
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10500706	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16905630	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16905637	1.00[CEU][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16905739	0.94[EUR][1000 genomes]
rs16905828	0.90[LWK][hapmap];0.88[MKK][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs16905855	0.90[LWK][hapmap];0.88[MKK][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs57208947	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59504764	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60812444	0.88[AFR][1000 genomes]
rs61359613	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74053139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74053168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74053199	0.88[AFR][1000 genomes]
rs74053200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7937844	0.88[AFR][1000 genomes]
rs7938235	0.90[LWK][hapmap];0.88[MKK][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs7949147	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs7950178	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv553447	chr11:8792622-8825966	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8779600-8799600	Weak transcription	Fetal Brain Male	brain
2	chr11:8785200-8799400	Enhancers	Fetal Heart	heart
3	chr11:8786600-8798000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:8786600-8803000	Enhancers	Ovary	ovary
5	chr11:8787000-8797800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:8788200-8797000	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:8788600-8799600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:8788800-8801400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:8788800-8808400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:8789000-8801200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:8789400-8797000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:8789400-8797400	Weak transcription	Brain Substantia Nigra	brain
13	chr11:8789400-8807600	Weak transcription	Fetal Kidney	kidney
14	chr11:8789600-8799400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:8789600-8805800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:8790800-8797000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:8791400-8797000	Weak transcription	Psoas Muscle	Psoas
18	chr11:8791400-8810400	Weak transcription	Hela-S3	cervix
19	chr11:8792400-8797000	Enhancers	Colon Smooth Muscle	Colon
20	chr11:8792600-8802400	Genic enhancers	Fetal Stomach	stomach
21	chr11:8793000-8797600	Enhancers	NHLF	lung
22	chr11:8793000-8798000	Weak transcription	Liver	Liver
23	chr11:8793200-8801600	Genic enhancers	Fetal Muscle Leg	muscle
24	chr11:8794000-8799400	Enhancers	Spleen	Spleen
25	chr11:8794200-8798200	Enhancers	Lung	lung
26	chr11:8794200-8798400	Enhancers	Right Atrium	heart
27	chr11:8794200-8799400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:8794200-8801000	Enhancers	Pancreas	Pancrea
29	chr11:8794200-8803000	Enhancers	Left Ventricle	heart
30	chr11:8794400-8798200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:8794600-8797400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:8794600-8803000	Enhancers	Right Ventricle	heart
33	chr11:8794800-8797800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:8795000-8797000	Weak transcription	Aorta	Aorta
35	chr11:8795000-8797000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:8795000-8799600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:8795000-8801400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:8795000-8809800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:8795200-8797000	Weak transcription	Placenta	Placenta
40	chr11:8795200-8798000	Enhancers	Esophagus	oesophagus
41	chr11:8795200-8799000	Weak transcription	Fetal Lung	lung
42	chr11:8795200-8799400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:8795200-8799400	Weak transcription	Brain Anterior Caudate	brain
44	chr11:8795200-8799400	Weak transcription	NH-A	brain
45	chr11:8795200-8799400	Weak transcription	Osteobl	bone
46	chr11:8795400-8797000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr11:8795600-8798200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:8795600-8802600	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr11:8796000-8797000	Weak transcription	NHDF-Ad	bronchial
50	chr11:8796000-8798200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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