Variant report

Variant	rs16906005
Chromosome Location	chr9:92732069-92732070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92216705..92219095-chr9:92730005..92732968,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10491802	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs35957386	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744296	0.91[ASN][1000 genomes]
rs57948814	0.91[ASN][1000 genomes]
rs6479587	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67438728	0.94[ASN][1000 genomes]
rs7030989	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030995	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034490	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7041200	0.94[ASN][1000 genomes]
rs7045450	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7045961	0.91[ASN][1000 genomes]
rs721832	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7850391	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7868721	0.91[ASN][1000 genomes]
rs7868852	0.91[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92724800-92732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:92725600-92738200	Weak transcription	Lung	lung
3	chr9:92727400-92732800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:92729600-92733800	Enhancers	Fetal Intestine Small	intestine
5	chr9:92730800-92733800	Enhancers	Fetal Intestine Large	intestine
6	chr9:92731000-92732600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:92731200-92732200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr9:92731400-92732400	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr9:92731600-92732200	Enhancers	Duodenum Mucosa	Duodenum
10	chr9:92731600-92732200	Enhancers	Fetal Kidney	kidney
11	chr9:92731600-92732200	Enhancers	Psoas Muscle	Psoas
12	chr9:92731600-92732600	Enhancers	Small Intestine	intestine
13	chr9:92731600-92732600	Enhancers	Stomach Mucosa	stomach
14	chr9:92731600-92732800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:92731600-92732800	Enhancers	HepG2	liver
16	chr9:92731800-92732200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr9:92731800-92732200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:92731800-92732200	Enhancers	Liver	Liver
19	chr9:92731800-92732200	Enhancers	Fetal Heart	heart
20	chr9:92731800-92732200	Enhancers	Rectal Smooth Muscle	rectum
21	chr9:92731800-92732200	Enhancers	Stomach Smooth Muscle	stomach
22	chr9:92731800-92732600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
23	chr9:92732000-92732200	Active TSS	Colonic Mucosa	Colon
24	chr9:92732000-92733400	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links