Variant report

Variant	rs7030989
Chromosome Location	chr9:92725441-92725442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10491802	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs16906005	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35957386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744296	0.91[ASN][1000 genomes]
rs57948814	0.91[ASN][1000 genomes]
rs6479587	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67438728	0.94[ASN][1000 genomes]
rs7030995	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034490	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7041200	0.94[ASN][1000 genomes]
rs7045450	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7045961	0.91[ASN][1000 genomes]
rs721832	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7850391	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7868721	0.91[ASN][1000 genomes]
rs7868852	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424181	chr9:92723632-92727930	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92723400-92725600	Enhancers	Lung	lung
2	chr9:92723400-92725800	Enhancers	Spleen	Spleen
3	chr9:92723600-92726000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr9:92723600-92727800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:92724000-92725600	Enhancers	Esophagus	oesophagus
6	chr9:92724000-92725600	Enhancers	Placenta	Placenta
7	chr9:92724000-92727400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:92724200-92725800	Enhancers	Primary B cells from cord blood	blood
9	chr9:92724400-92727000	Weak transcription	Right Atrium	heart
10	chr9:92724800-92726200	Weak transcription	Liver	Liver
11	chr9:92724800-92729800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:92724800-92732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:92725000-92726000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:92725000-92726800	Weak transcription	NHDF-Ad	bronchial
15	chr9:92725000-92727600	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:92725000-92729600	Weak transcription	Fetal Intestine Small	intestine
17	chr9:92725200-92726800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:92725400-92731000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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