Variant report

Variant	rs7850391
Chromosome Location	chr9:92723456-92723457
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92710212..92712786-chr9:92722735..92725255,2	MCF-7	breast:
2	chr9:92722728..92724376-chr9:92724584..92726100,2	MCF-7	breast:
3	chr9:92717917..92719509-chr9:92721861..92724237,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10491802	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs16906005	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35957386	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744296	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57948814	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6479587	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67438728	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7030989	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7030995	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7034490	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041200	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7045450	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7045961	0.94[ASN][1000 genomes]
rs721832	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868721	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7868852	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515158	chr9:92723012-92723556	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92706000-92723600	Weak transcription	HSMMtube	muscle
2	chr9:92716800-92724000	Weak transcription	Esophagus	oesophagus
3	chr9:92717000-92724200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:92718200-92723600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr9:92718400-92724000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:92719600-92724200	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:92719800-92723600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:92719800-92723800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:92720600-92724000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:92721200-92723800	Weak transcription	NHDF-Ad	bronchial
11	chr9:92722600-92725400	Enhancers	Fetal Muscle Leg	muscle
12	chr9:92723000-92724000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:92723200-92724400	Enhancers	Pancreas	Pancrea
14	chr9:92723400-92723600	Enhancers	Fetal Intestine Large	intestine
15	chr9:92723400-92723800	Enhancers	Colonic Mucosa	Colon
16	chr9:92723400-92724000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr9:92723400-92724000	Enhancers	HSMM	muscle
18	chr9:92723400-92724200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr9:92723400-92724200	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr9:92723400-92724200	Enhancers	Rectal Smooth Muscle	rectum
21	chr9:92723400-92724800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr9:92723400-92725000	Enhancers	Fetal Intestine Small	intestine
23	chr9:92723400-92725200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:92723400-92725600	Enhancers	Lung	lung
25	chr9:92723400-92725800	Enhancers	Spleen	Spleen

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