Variant report

Variant	rs7045961
Chromosome Location	chr9:92713999-92714000
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10491802	0.81[TSI][hapmap]
rs16906005	0.91[ASN][1000 genomes]
rs35957386	0.94[ASN][1000 genomes]
rs4744120	0.82[AFR][1000 genomes]
rs4744296	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57948814	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479587	0.94[ASN][1000 genomes]
rs66590316	0.83[AFR][1000 genomes]
rs67438728	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7030989	0.91[ASN][1000 genomes]
rs7030995	0.91[ASN][1000 genomes]
rs7034490	0.94[ASN][1000 genomes]
rs7041200	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7045450	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs721832	0.94[ASN][1000 genomes]
rs7850391	0.94[ASN][1000 genomes]
rs7868721	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868852	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7045961	S1PR3	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92705600-92719200	Weak transcription	Ovary	ovary
2	chr9:92706000-92723600	Weak transcription	HSMMtube	muscle
3	chr9:92707000-92716200	Weak transcription	Psoas Muscle	Psoas
4	chr9:92707000-92716200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:92709600-92714200	Weak transcription	Fetal Stomach	stomach
6	chr9:92711800-92714000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:92711800-92715800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:92711800-92716200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:92712000-92715000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:92713400-92715800	Enhancers	NHLF	lung
11	chr9:92713600-92714200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:92713600-92715800	Enhancers	NHDF-Ad	bronchial
13	chr9:92713600-92716200	Weak transcription	Lung	lung
14	chr9:92713600-92718400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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