Variant report

Variant	rs16914526
Chromosome Location	chr8:51130853-51130854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10107397	0.84[MEX][hapmap]
rs10282933	0.83[CHD][hapmap];0.88[JPT][hapmap]
rs10504101	0.88[CHD][hapmap];0.84[MEX][hapmap]
rs11986031	0.86[CHB][hapmap]
rs11987017	0.86[CHB][hapmap]
rs11994226	0.86[CHB][hapmap]
rs1450123	0.82[CHD][hapmap]
rs1484809	0.86[CHB][hapmap]
rs1484810	0.86[CHB][hapmap]
rs1484811	1.00[CHB][hapmap]
rs16914220	0.86[CHB][hapmap]
rs16914234	0.86[CHB][hapmap];0.90[GIH][hapmap]
rs16914250	1.00[CHB][hapmap]
rs16914299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16914318	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs16914321	1.00[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs16914423	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs16914726	0.82[CHD][hapmap];0.82[GIH][hapmap]
rs1906070	1.00[CHB][hapmap]
rs1993680	0.81[AMR][1000 genomes]
rs2169183	0.82[CHD][hapmap];0.82[MEX][hapmap]
rs4242461	0.82[CHD][hapmap]
rs4367564	0.82[CHD][hapmap]
rs4467946	0.82[GIH][hapmap]
rs4873402	0.83[GIH][hapmap]
rs4873403	0.86[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap]
rs4873409	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs4873441	0.88[JPT][hapmap]
rs4873450	0.83[CHD][hapmap];0.84[MEX][hapmap]
rs4873455	0.82[CHD][hapmap]
rs73676252	0.81[ASN][1000 genomes]
rs73676273	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9298318	0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2829897	chr8:51125957-51135544	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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