Variant report

Variant	rs16918220
Chromosome Location	chr9:101833852-101833853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101625807..101630456-chr9:101833733..101838551,4	K562	blood:
2	chr9:101551519..101553128-chr9:101832657..101834738,2	K562	blood:

Variant related genes	Relation type
ENSG00000165138	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10988732	1.00[MKK][hapmap]
rs16918141	1.00[EUR][1000 genomes]
rs16918194	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918218	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918228	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16918238	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16918245	1.00[EUR][1000 genomes]
rs2274960	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3737146	1.00[EUR][1000 genomes]
rs3780619	1.00[EUR][1000 genomes]
rs3824512	1.00[EUR][1000 genomes]
rs7863250	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
2	chr9:101816200-101844200	Weak transcription	Gastric	stomach
3	chr9:101818000-101834800	Weak transcription	Pancreas	Pancrea
4	chr9:101821800-101834800	Strong transcription	Stomach Smooth Muscle	stomach
5	chr9:101822000-101834000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:101822400-101837600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:101822400-101838600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:101825200-101836200	Weak transcription	Fetal Brain Female	brain
9	chr9:101826600-101848200	Weak transcription	Aorta	Aorta
10	chr9:101828600-101837000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:101829000-101834600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:101829600-101834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:101830000-101837600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:101831000-101834600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:101831200-101839000	Weak transcription	Colonic Mucosa	Colon
16	chr9:101831600-101834600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:101831600-101834600	Enhancers	NHLF	lung
18	chr9:101831800-101837000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:101831800-101837000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:101831800-101838400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:101832000-101834200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:101832000-101834600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:101832000-101837200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr9:101832200-101834000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:101832200-101834000	Weak transcription	Placenta	Placenta
26	chr9:101832200-101834200	Enhancers	Osteobl	bone
27	chr9:101832200-101835200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr9:101832200-101836600	Weak transcription	Thymus	Thymus
29	chr9:101832200-101836600	Weak transcription	Dnd41	blood
30	chr9:101832200-101837000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr9:101832200-101837600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr9:101832200-101837800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr9:101832200-101839200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:101832400-101834000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:101832400-101834800	Enhancers	HSMM	muscle
36	chr9:101832400-101836600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr9:101832600-101837200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr9:101832600-101837600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr9:101832800-101835000	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr9:101832800-101837400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr9:101833000-101834200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:101833000-101835000	Enhancers	Lung	lung
43	chr9:101833000-101835800	Enhancers	NH-A	brain
44	chr9:101833200-101834000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:101833200-101834400	Enhancers	Primary T cells fromperipheralblood	blood
46	chr9:101833200-101834600	Enhancers	Right Ventricle	heart
47	chr9:101833200-101834800	Enhancers	Left Ventricle	heart
48	chr9:101833200-101834800	Enhancers	HSMMtube	muscle
49	chr9:101833200-101835200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr9:101833400-101834000	Enhancers	Colon Smooth Muscle	Colon

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