Variant report

Variant	rs3780619
Chromosome Location	chr9:101802067-101802068
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101801421..101804201-chr9:101810789..101812954,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10819640	1.00[LWK][hapmap]
rs11568778	1.00[LWK][hapmap]
rs16918141	0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918194	1.00[EUR][1000 genomes]
rs16918218	1.00[EUR][1000 genomes]
rs16918220	1.00[EUR][1000 genomes]
rs16918228	1.00[EUR][1000 genomes]
rs16918238	1.00[EUR][1000 genomes]
rs16918245	1.00[EUR][1000 genomes]
rs2274960	1.00[EUR][1000 genomes]
rs3737146	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3824512	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs7022519	0.89[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs7863250	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs914993	0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
3	chr9:101787200-101806400	Weak transcription	Ovary	ovary
4	chr9:101788200-101803200	Weak transcription	Spleen	Spleen
5	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
6	chr9:101789200-101805400	Weak transcription	Right Ventricle	heart
7	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
8	chr9:101795400-101803200	Strong transcription	Fetal Muscle Trunk	muscle
9	chr9:101795800-101803200	Strong transcription	Adipose Nuclei	Adipose
10	chr9:101796200-101806400	Strong transcription	Stomach Smooth Muscle	stomach
11	chr9:101798200-101803200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr9:101798200-101811400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:101798400-101803200	Weak transcription	Primary T cells from cord blood	blood
14	chr9:101798400-101819800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:101798800-101803200	Weak transcription	Thymus	Thymus
16	chr9:101799000-101802800	Enhancers	Fetal Brain Male	brain
17	chr9:101799000-101804600	Enhancers	HSMM	muscle
18	chr9:101799200-101803200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:101799200-101814600	Weak transcription	Pancreas	Pancrea
20	chr9:101799400-101804000	Genic enhancers	Fetal Muscle Leg	muscle
21	chr9:101799400-101804200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:101799400-101805200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:101799600-101803200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:101800000-101802800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:101800000-101804200	Enhancers	Osteobl	bone
26	chr9:101800200-101804200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:101800200-101806800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:101800600-101804400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:101801200-101802200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:101801200-101803400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:101801200-101803800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:101801200-101804400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr9:101801400-101802600	Enhancers	Fetal Brain Female	brain
34	chr9:101801400-101803000	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr9:101801400-101804200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:101801400-101804200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr9:101801400-101804400	Enhancers	HSMMtube	muscle
38	chr9:101801600-101804200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:101801600-101806200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr9:101801800-101802200	Genic enhancers	Fetal Stomach	stomach
41	chr9:101801800-101802400	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr9:101801800-101803600	Enhancers	HUVEC	blood vessel
43	chr9:101801800-101803800	Enhancers	Primary B cells from peripheral blood	blood
44	chr9:101801800-101803800	Enhancers	NHEK	skin
45	chr9:101801800-101804000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:101801800-101804000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:101801800-101804000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:101801800-101804000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:101801800-101804200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:101801800-101804200	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links