Variant report

Variant	rs16918238
Chromosome Location	chr9:101843122-101843123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16918141	1.00[EUR][1000 genomes]
rs16918194	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16918218	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16918220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16918228	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16918245	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2274960	1.00[EUR][1000 genomes]
rs3737146	1.00[EUR][1000 genomes]
rs3780619	1.00[EUR][1000 genomes]
rs3824512	1.00[EUR][1000 genomes]
rs7030965	1.00[AMR][1000 genomes]
rs7034533	1.00[AMR][1000 genomes]
rs7847481	1.00[AMR][1000 genomes]
rs7863250	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101816200-101844200	Weak transcription	Gastric	stomach
2	chr9:101826600-101848200	Weak transcription	Aorta	Aorta
3	chr9:101839600-101844600	Weak transcription	Left Ventricle	heart
4	chr9:101839600-101849000	Weak transcription	Adipose Nuclei	Adipose
5	chr9:101840000-101853800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr9:101840200-101847600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:101841400-101844600	Weak transcription	K562	blood
8	chr9:101841400-101848000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:101841800-101848000	Weak transcription	HSMMtube	muscle
10	chr9:101842000-101847200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:101842000-101847600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:101842000-101848000	Weak transcription	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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