Variant report

Variant	rs3824512
Chromosome Location	chr9:101813802-101813803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16918141	1.00[EUR][1000 genomes]
rs16918194	1.00[EUR][1000 genomes]
rs16918218	1.00[EUR][1000 genomes]
rs16918220	1.00[EUR][1000 genomes]
rs16918228	1.00[EUR][1000 genomes]
rs16918238	1.00[EUR][1000 genomes]
rs16918245	1.00[EUR][1000 genomes]
rs2274960	1.00[EUR][1000 genomes]
rs3737146	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs3780619	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs7863250	0.82[JPT][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
3	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
4	chr9:101798400-101819800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:101799200-101814600	Weak transcription	Pancreas	Pancrea
6	chr9:101804000-101820000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:101805800-101819400	Strong transcription	Adipose Nuclei	Adipose
8	chr9:101805800-101820600	Weak transcription	Right Ventricle	heart
9	chr9:101806600-101817000	Weak transcription	Left Ventricle	heart
10	chr9:101807000-101831800	Strong transcription	Fetal Muscle Trunk	muscle
11	chr9:101807400-101814200	Weak transcription	Small Intestine	intestine
12	chr9:101807400-101819000	Strong transcription	Fetal Stomach	stomach
13	chr9:101807600-101831800	Strong transcription	Fetal Muscle Leg	muscle
14	chr9:101807800-101819800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:101808400-101817200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:101809200-101821600	Weak transcription	Brain Anterior Caudate	brain
17	chr9:101809800-101815000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:101810400-101816200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:101810600-101814600	Strong transcription	Stomach Smooth Muscle	stomach
20	chr9:101810600-101814600	Weak transcription	Spleen	Spleen
21	chr9:101810600-101816000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:101810600-101817600	Weak transcription	Ovary	ovary
23	chr9:101810600-101819800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr9:101810800-101814600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:101811000-101814000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:101811200-101820000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:101811400-101814800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr9:101811400-101816400	Enhancers	K562	blood
29	chr9:101811600-101814200	Enhancers	NHDF-Ad	bronchial
30	chr9:101811800-101814800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr9:101811800-101814800	Weak transcription	Fetal Thymus	thymus
32	chr9:101812000-101814200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr9:101812000-101814600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr9:101812000-101815400	Enhancers	NH-A	brain
35	chr9:101812200-101814000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr9:101812200-101814200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr9:101812200-101814200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr9:101812200-101814800	Enhancers	Osteobl	bone
39	chr9:101812200-101818600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:101812400-101814600	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr9:101812800-101814400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr9:101812800-101815000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr9:101812800-101815800	Weak transcription	HSMMtube	muscle
44	chr9:101813000-101814800	Enhancers	Fetal Heart	heart
45	chr9:101813000-101817600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:101813000-101819400	Weak transcription	NHLF	lung
47	chr9:101813200-101814200	Enhancers	Fetal Intestine Small	intestine
48	chr9:101813200-101833000	Weak transcription	Lung	lung
49	chr9:101813400-101814200	Enhancers	Fetal Intestine Large	intestine
50	chr9:101813400-101814800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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