Variant report

Variant	rs16918228
Chromosome Location	chr9:101834851-101834852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101828711..101831870-chr9:101834317..101838046,3	MCF-7	breast:
2	chr9:101625807..101630456-chr9:101833733..101838551,4	K562	blood:
3	chr9:101782750..101786222-chr9:101834554..101837470,3	K562	blood:
4	chr9:101793999..101795720-chr9:101833951..101836839,3	K562	blood:
5	chr9:101834831..101839915-chr9:101875600..101879100,5	K562	blood:
6	chr9:101793999..101795600-chr9:101833951..101836839,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16918141	1.00[EUR][1000 genomes]
rs16918194	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16918218	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16918220	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16918238	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16918245	1.00[EUR][1000 genomes]
rs2274960	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3737146	1.00[EUR][1000 genomes]
rs3780619	1.00[EUR][1000 genomes]
rs3824512	1.00[EUR][1000 genomes]
rs7863250	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
2	chr9:101816200-101844200	Weak transcription	Gastric	stomach
3	chr9:101822400-101837600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:101822400-101838600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:101825200-101836200	Weak transcription	Fetal Brain Female	brain
6	chr9:101826600-101848200	Weak transcription	Aorta	Aorta
7	chr9:101828600-101837000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:101830000-101837600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:101831200-101839000	Weak transcription	Colonic Mucosa	Colon
10	chr9:101831800-101837000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:101831800-101837000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:101831800-101838400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr9:101832000-101837200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:101832200-101835200	Strong transcription	Fetal Muscle Trunk	muscle
15	chr9:101832200-101836600	Weak transcription	Thymus	Thymus
16	chr9:101832200-101836600	Weak transcription	Dnd41	blood
17	chr9:101832200-101837000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:101832200-101837600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:101832200-101837800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:101832200-101839200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:101832400-101836600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr9:101832600-101837200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr9:101832600-101837600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr9:101832800-101835000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr9:101832800-101837400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr9:101833000-101835000	Enhancers	Lung	lung
27	chr9:101833000-101835800	Enhancers	NH-A	brain
28	chr9:101833200-101835200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr9:101833400-101835000	Enhancers	Fetal Heart	heart
30	chr9:101833400-101837200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr9:101833400-101837200	Weak transcription	NHDF-Ad	bronchial
32	chr9:101833400-101837600	Weak transcription	Primary T cells from cord blood	blood
33	chr9:101833800-101835200	Enhancers	Right Atrium	heart
34	chr9:101833800-101835800	Enhancers	Adipose Nuclei	Adipose
35	chr9:101833800-101835800	Genic enhancers	Fetal Muscle Leg	muscle
36	chr9:101833800-101835800	Enhancers	Spleen	Spleen
37	chr9:101833800-101837000	Weak transcription	Fetal Thymus	thymus
38	chr9:101833800-101837400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr9:101834000-101835800	Strong transcription	Fetal Stomach	stomach
40	chr9:101834000-101837200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:101834000-101837200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:101834000-101839000	Weak transcription	Colon Smooth Muscle	Colon
43	chr9:101834200-101835000	Flanking Active TSS	K562	blood
44	chr9:101834200-101837200	Weak transcription	Osteobl	bone
45	chr9:101834200-101837400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:101834600-101835600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr9:101834600-101836800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr9:101834600-101837000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:101834600-101837400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:101834600-101837400	Weak transcription	Placenta	Placenta

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