Variant report

Variant	rs16918674
Chromosome Location	chr9:100025251-100025252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1564047	0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16918557	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes]
rs16919509	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16920147	1.00[AMR][1000 genomes]
rs16920171	1.00[AMR][1000 genomes]
rs16920394	1.00[AMR][1000 genomes]
rs16920403	1.00[AMR][1000 genomes]
rs16920407	1.00[AMR][1000 genomes]
rs16920414	1.00[AMR][1000 genomes]
rs16920418	1.00[AMR][1000 genomes]
rs16920957	1.00[AMR][1000 genomes]
rs16920969	1.00[AMR][1000 genomes]
rs2290934	1.00[AMR][1000 genomes]
rs2306093	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2306096	0.88[CHD][hapmap];1.00[AMR][1000 genomes]
rs3214071	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3747497	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3747512	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4073032	1.00[AMR][1000 genomes]
rs56693664	1.00[AMR][1000 genomes]
rs56722069	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59615478	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60055068	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61701966	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972791	chr9:100007482-100037888	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100001200-100039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:100001600-100037400	Weak transcription	Primary T cells from cord blood	blood
3	chr9:100002000-100025400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:100002000-100037400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:100002000-100037800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:100002000-100038600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:100002000-100038600	Weak transcription	Fetal Intestine Large	intestine
8	chr9:100002000-100038600	Weak transcription	Fetal Intestine Small	intestine
9	chr9:100002000-100038800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr9:100002000-100038800	Weak transcription	Ovary	ovary
11	chr9:100002000-100038800	Weak transcription	Right Ventricle	heart
12	chr9:100002000-100039000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:100002000-100039600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:100002000-100039600	Weak transcription	Adipose Nuclei	Adipose
15	chr9:100002000-100039600	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:100002000-100039600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:100002000-100040400	Weak transcription	Spleen	Spleen
18	chr9:100002200-100038800	Weak transcription	Liver	Liver
19	chr9:100002200-100039400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr9:100002200-100039400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:100002400-100037400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr9:100010600-100039400	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:100011600-100038800	Weak transcription	Fetal Stomach	stomach
24	chr9:100011600-100039600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr9:100013000-100040400	Weak transcription	Brain Substantia Nigra	brain
26	chr9:100021400-100025400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:100022600-100039000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:100023400-100039600	Weak transcription	Fetal Lung	lung
29	chr9:100023600-100032800	Weak transcription	K562	blood
30	chr9:100024400-100040600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:100024400-100042600	Weak transcription	Fetal Heart	heart
32	chr9:100025000-100039400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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