Variant report

Variant	rs16920171
Chromosome Location	chr9:100191982-100191983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100185198..100188170-chr9:100190845..100193697,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11999505	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12001521	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12002167	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12006001	0.98[ASN][1000 genomes]
rs1564047	1.00[AMR][1000 genomes]
rs16918557	1.00[AMR][1000 genomes]
rs16918674	1.00[AMR][1000 genomes]
rs16919509	1.00[AMR][1000 genomes]
rs16920147	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920387	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16920392	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16920394	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16920403	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16920407	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16920414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16920418	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16920957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16921066	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16921086	0.91[CHB][hapmap];1.00[EUR][1000 genomes]
rs2290934	1.00[AMR][1000 genomes]
rs2306093	1.00[AMR][1000 genomes]
rs2306096	1.00[AMR][1000 genomes]
rs3214071	1.00[AMR][1000 genomes]
rs35600334	0.98[ASN][1000 genomes]
rs3747497	1.00[AMR][1000 genomes]
rs3747512	1.00[AMR][1000 genomes]
rs4073032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56693664	1.00[AMR][1000 genomes]
rs56722069	1.00[AMR][1000 genomes]
rs58008468	0.98[ASN][1000 genomes]
rs59615478	1.00[AMR][1000 genomes]
rs59749998	0.98[ASN][1000 genomes]
rs59837265	0.93[ASN][1000 genomes]
rs60023110	0.98[ASN][1000 genomes]
rs60055068	1.00[AMR][1000 genomes]
rs61418045	0.93[ASN][1000 genomes]
rs61701966	1.00[AMR][1000 genomes]
rs62557474	0.98[ASN][1000 genomes]
rs62557475	0.98[ASN][1000 genomes]
rs62557493	0.98[ASN][1000 genomes]
rs62557495	0.98[ASN][1000 genomes]
rs62557498	0.95[ASN][1000 genomes]
rs62557499	0.93[ASN][1000 genomes]
rs62557500	0.98[ASN][1000 genomes]
rs62557501	0.98[ASN][1000 genomes]
rs62557510	0.86[ASN][1000 genomes]
rs7044475	0.93[ASN][1000 genomes]
rs7048438	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs732688	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs732689	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7853578	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893609	chr9:100163998-100297592	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100175400-100230800	Weak transcription	Psoas Muscle	Psoas
2	chr9:100175600-100202600	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:100175600-100245200	Weak transcription	Right Ventricle	heart
4	chr9:100176200-100194400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:100176200-100203000	Weak transcription	Dnd41	blood
6	chr9:100176400-100192000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:100176600-100192600	Weak transcription	Fetal Brain Male	brain
8	chr9:100181800-100193800	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:100182000-100199600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:100182000-100205200	Weak transcription	Esophagus	oesophagus
11	chr9:100182000-100215600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:100182000-100234200	Weak transcription	A549	lung
13	chr9:100182200-100199400	Weak transcription	Pancreas	Pancrea
14	chr9:100182200-100202400	Weak transcription	NHLF	lung
15	chr9:100182200-100202800	Weak transcription	HSMMtube	muscle
16	chr9:100182200-100236000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:100182200-100263400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:100182400-100203800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:100182600-100192600	Weak transcription	HUVEC	blood vessel
20	chr9:100182600-100208600	Weak transcription	HSMM	muscle
21	chr9:100184600-100205200	Weak transcription	Brain Angular Gyrus	brain
22	chr9:100185400-100204200	Weak transcription	Fetal Heart	heart
23	chr9:100186800-100192800	Weak transcription	K562	blood
24	chr9:100188200-100192600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:100188200-100204400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr9:100188600-100198800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:100188600-100205800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:100188800-100230600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr9:100189000-100194400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr9:100189200-100192800	Weak transcription	Fetal Brain Female	brain
31	chr9:100189200-100213800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:100189600-100197600	Strong transcription	Primary T cells from cord blood	blood
33	chr9:100189600-100203400	Weak transcription	Brain Germinal Matrix	brain
34	chr9:100189800-100196600	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr9:100189800-100197800	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr9:100189800-100202800	Weak transcription	Fetal Thymus	thymus
37	chr9:100190000-100199800	Weak transcription	Fetal Kidney	kidney
38	chr9:100190200-100192000	Strong transcription	Fetal Intestine Small	intestine
39	chr9:100190200-100195400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr9:100190200-100198000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr9:100190400-100192000	Strong transcription	Aorta	Aorta
42	chr9:100190400-100194400	Strong transcription	Spleen	Spleen
43	chr9:100190400-100194800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:100190400-100196600	Strong transcription	Adipose Nuclei	Adipose
45	chr9:100190400-100197600	Strong transcription	Primary B cells from cord blood	blood
46	chr9:100190400-100197600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr9:100190400-100198600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr9:100190400-100203800	Weak transcription	NHEK	skin
49	chr9:100190600-100193200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr9:100190600-100194400	Weak transcription	Thymus	Thymus

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