Variant report

Variant	rs16921066
Chromosome Location	chr9:100254685-100254686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100252717..100255047-chr9:100263780..100265362,2	MCF-7	breast:
2	chr9:100248658..100251815-chr9:100254472..100256601,3	K562	blood:
3	chr9:100252474..100255762-chr9:100262126..100264453,3	K562	blood:
4	chr9:100248658..100252224-chr9:100254472..100256861,3	K562	blood:

Variant related genes	Relation type
ENSG00000136842	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11999505	0.82[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12001521	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12002167	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1330125	0.80[CHB][hapmap]
rs1564047	1.00[AMR][1000 genomes]
rs16919509	1.00[AMR][1000 genomes]
rs16920147	0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920171	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16920387	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16920392	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16920394	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16920403	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16920407	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16920414	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16920418	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16920957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16920969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16921086	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2290934	1.00[AMR][1000 genomes]
rs2306093	1.00[AMR][1000 genomes]
rs2306096	1.00[AMR][1000 genomes]
rs3214071	1.00[AMR][1000 genomes]
rs3747497	1.00[AMR][1000 genomes]
rs3747512	1.00[AMR][1000 genomes]
rs4073032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56693664	1.00[AMR][1000 genomes]
rs56722069	1.00[AMR][1000 genomes]
rs59615478	1.00[AMR][1000 genomes]
rs60055068	1.00[AMR][1000 genomes]
rs61701966	1.00[AMR][1000 genomes]
rs62557510	0.84[ASN][1000 genomes]
rs7048438	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs732688	0.82[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs732689	0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893609	chr9:100163998-100297592	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100182200-100263400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:100195400-100259800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:100203600-100262000	Weak transcription	Stomach Mucosa	stomach
4	chr9:100226600-100261600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:100226600-100262000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:100228600-100261200	Weak transcription	Fetal Stomach	stomach
7	chr9:100229400-100258600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:100236800-100258600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:100237600-100258600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:100237600-100261600	Weak transcription	NHLF	lung
11	chr9:100243800-100260400	Weak transcription	Fetal Kidney	kidney
12	chr9:100244600-100255400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr9:100244800-100262000	Weak transcription	HSMM	muscle
14	chr9:100245400-100261800	Weak transcription	Fetal Brain Male	brain
15	chr9:100245600-100258000	Weak transcription	Gastric	stomach
16	chr9:100245600-100258000	Weak transcription	Lung	lung
17	chr9:100245600-100262200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:100245800-100258400	Weak transcription	Thymus	Thymus
19	chr9:100245800-100262400	Weak transcription	HepG2	liver
20	chr9:100246000-100262200	Weak transcription	Dnd41	blood
21	chr9:100246600-100263400	Weak transcription	Right Ventricle	heart
22	chr9:100246800-100261600	Weak transcription	Brain Germinal Matrix	brain
23	chr9:100247200-100258600	Weak transcription	Brain Substantia Nigra	brain
24	chr9:100247200-100263200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:100247200-100263400	Weak transcription	Colonic Mucosa	Colon
26	chr9:100247600-100258400	Weak transcription	Brain Anterior Caudate	brain
27	chr9:100248000-100263400	Weak transcription	Brain Angular Gyrus	brain
28	chr9:100249200-100260800	Weak transcription	Small Intestine	intestine
29	chr9:100250400-100255600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr9:100250600-100257800	Weak transcription	Aorta	Aorta
31	chr9:100250600-100257800	Weak transcription	Spleen	Spleen
32	chr9:100250600-100258000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr9:100250600-100258600	Weak transcription	Pancreas	Pancrea
34	chr9:100251000-100258600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr9:100251000-100261000	Weak transcription	Placenta	Placenta
36	chr9:100251000-100261600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:100251000-100262000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:100251200-100257000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr9:100251200-100257600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr9:100251200-100258000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:100251200-100258000	Weak transcription	Esophagus	oesophagus
42	chr9:100251200-100258600	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:100251200-100258600	Weak transcription	Fetal Intestine Small	intestine
44	chr9:100251200-100258600	Weak transcription	Left Ventricle	heart
45	chr9:100251200-100260000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:100251200-100261200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:100251200-100261200	Weak transcription	Fetal Muscle Leg	muscle
48	chr9:100251200-100263400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr9:100251400-100257800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:100251400-100258000	Weak transcription	Fetal Intestine Large	intestine

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