Variant report
| Variant | rs16919474 |
|---|---|
| Chromosome Location | chr8:78308456-78308457 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:12)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:12 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ZEB1 | chr8:78308339-78308776 | HepG2 | liver: | n/a | chr8:78308530-78308541 |
| 2 | ZEB1 | chr8:78308306-78308880 | HepG2 | liver: | n/a | chr8:78308530-78308541 |
| 3 | FOXA1 | chr8:78308299-78308939 | HepG2 | liver: | n/a | n/a |
| 4 | TCF7L2 | chr8:78308402-78308807 | HepG2 | liver: | n/a | n/a |
| 5 | FOXA1 | chr8:78308300-78308965 | HepG2 | liver: | n/a | n/a |
| 6 | NFIC | chr8:78308241-78308940 | HepG2 | liver: | n/a | n/a |
| 7 | MBD4 | chr8:78308351-78308770 | HepG2 | liver: | n/a | n/a |
| 8 | EP300 | chr8:78308256-78308874 | HepG2 | liver: | n/a | chr8:78308311-78308325 |
| 9 | FOXA2 | chr8:78308343-78308854 | HepG2 | liver: | n/a | n/a |
| 10 | MYBL2 | chr8:78308240-78308974 | HepG2 | liver: | n/a | n/a |
| 11 | FOXA1 | chr8:78308275-78308967 | HepG2 | liver: | n/a | n/a |
| 12 | FOXA2 | chr8:78308116-78309118 | HepG2 | liver: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254366 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs16939481 | 1.00[AMR][1000 genomes] |
| rs16939483 | 1.00[AMR][1000 genomes] |
| rs56177095 | 1.00[AMR][1000 genomes] |
| rs56386822 | 1.00[AMR][1000 genomes] |
| rs56766898 | 1.00[AMR][1000 genomes] |
| rs58927140 | 1.00[AMR][1000 genomes] |
| rs59757211 | 1.00[AMR][1000 genomes] |
| rs6993861 | 0.85[YRI][hapmap] |
| rs72435768 | 1.00[AMR][1000 genomes] |
| rs73691374 | 1.00[AMR][1000 genomes] |
| rs73691629 | 1.00[AMR][1000 genomes] |
| rs73691630 | 1.00[AMR][1000 genomes] |
| rs73691674 | 1.00[AMR][1000 genomes] |
| rs73691675 | 1.00[AMR][1000 genomes] |
| rs73691684 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73691687 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73691688 | 1.00[AMR][1000 genomes] |
| rs73693504 | 1.00[AMR][1000 genomes] |
| rs73693525 | 1.00[AMR][1000 genomes] |
| rs73693556 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891045 | chr8:77998659-78477561 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv891046 | chr8:78265312-78311815 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv891047 | chr8:78265312-78322329 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv891048 | chr8:78271372-78322329 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:78308200-78309200 | Enhancers | HepG2 | liver |
