Variant report
| Variant | rs16939483 |
|---|---|
| Chromosome Location | chr8:78367125-78367126 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:78366207..78368304-chr8:78370051..78372752,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs16919474 | 0.82[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs16939481 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56177095 | 1.00[AMR][1000 genomes] |
| rs56386822 | 1.00[AMR][1000 genomes] |
| rs56766898 | 1.00[AMR][1000 genomes] |
| rs58927140 | 1.00[AMR][1000 genomes] |
| rs59757211 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6993861 | 1.00[YRI][hapmap] |
| rs72435768 | 1.00[AMR][1000 genomes] |
| rs73691374 | 1.00[AMR][1000 genomes] |
| rs73691629 | 1.00[AMR][1000 genomes] |
| rs73691630 | 1.00[AMR][1000 genomes] |
| rs73691674 | 1.00[AMR][1000 genomes] |
| rs73691675 | 1.00[AMR][1000 genomes] |
| rs73691684 | 1.00[AMR][1000 genomes] |
| rs73691687 | 1.00[AMR][1000 genomes] |
| rs73691688 | 1.00[AMR][1000 genomes] |
| rs73693504 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73693525 | 1.00[AMR][1000 genomes] |
| rs73693556 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891045 | chr8:77998659-78477561 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv891049 | chr8:78325885-78565529 | Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv891050 | chr8:78351635-78532763 | ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:78364000-78374000 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
