Variant report

Variant	rs73691684
Chromosome Location	chr8:78312067-78312068
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16919474	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939481	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939483	1.00[AMR][1000 genomes]
rs56177095	1.00[AMR][1000 genomes]
rs56386822	1.00[AMR][1000 genomes]
rs56766898	1.00[AMR][1000 genomes]
rs58927140	1.00[AMR][1000 genomes]
rs59757211	1.00[AMR][1000 genomes]
rs72435768	1.00[AMR][1000 genomes]
rs73691374	1.00[AMR][1000 genomes]
rs73691629	1.00[AMR][1000 genomes]
rs73691630	1.00[AMR][1000 genomes]
rs73691674	1.00[AMR][1000 genomes]
rs73691675	1.00[AMR][1000 genomes]
rs73691687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691688	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693504	1.00[AMR][1000 genomes]
rs73693525	1.00[AMR][1000 genomes]
rs73693556	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891047	chr8:78265312-78322329	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891048	chr8:78271372-78322329	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78311200-78312400	Active TSS	Fetal Muscle Trunk	muscle
2	chr8:78311200-78313800	Active TSS	Adipose Nuclei	Adipose
3	chr8:78311400-78312600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:78311400-78315800	Active TSS	Fetal Muscle Leg	muscle
5	chr8:78311600-78314800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:78311800-78312600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:78312000-78312400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:78312000-78312800	Enhancers	HepG2	liver
9	chr8:78312000-78313000	Active TSS	Liver	Liver
10	chr8:78312000-78313800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links