Variant report

Variant	rs16920253
Chromosome Location	chr9:100194653-100194654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10119264	1.00[AMR][1000 genomes]
rs10124635	1.00[AMR][1000 genomes]
rs12335678	1.00[AMR][1000 genomes]
rs12352173	1.00[AMR][1000 genomes]
rs2219663	1.00[AMR][1000 genomes]
rs28508080	1.00[AMR][1000 genomes]
rs58056009	1.00[AMR][1000 genomes]
rs7044096	1.00[AMR][1000 genomes]
rs73654702	1.00[AMR][1000 genomes]
rs73656821	1.00[AMR][1000 genomes]
rs7864805	1.00[AMR][1000 genomes]
rs970857	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893609	chr9:100163998-100297592	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100175400-100230800	Weak transcription	Psoas Muscle	Psoas
2	chr9:100175600-100202600	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:100175600-100245200	Weak transcription	Right Ventricle	heart
4	chr9:100176200-100203000	Weak transcription	Dnd41	blood
5	chr9:100182000-100199600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:100182000-100205200	Weak transcription	Esophagus	oesophagus
7	chr9:100182000-100215600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:100182000-100234200	Weak transcription	A549	lung
9	chr9:100182200-100199400	Weak transcription	Pancreas	Pancrea
10	chr9:100182200-100202400	Weak transcription	NHLF	lung
11	chr9:100182200-100202800	Weak transcription	HSMMtube	muscle
12	chr9:100182200-100236000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:100182200-100263400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:100182400-100203800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:100182600-100208600	Weak transcription	HSMM	muscle
16	chr9:100184600-100205200	Weak transcription	Brain Angular Gyrus	brain
17	chr9:100185400-100204200	Weak transcription	Fetal Heart	heart
18	chr9:100188200-100204400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:100188600-100198800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:100188600-100205800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:100188800-100230600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:100189200-100213800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:100189600-100197600	Strong transcription	Primary T cells from cord blood	blood
24	chr9:100189600-100203400	Weak transcription	Brain Germinal Matrix	brain
25	chr9:100189800-100196600	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:100189800-100197800	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:100189800-100202800	Weak transcription	Fetal Thymus	thymus
28	chr9:100190000-100199800	Weak transcription	Fetal Kidney	kidney
29	chr9:100190200-100195400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr9:100190200-100198000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr9:100190400-100194800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr9:100190400-100196600	Strong transcription	Adipose Nuclei	Adipose
33	chr9:100190400-100197600	Strong transcription	Primary B cells from cord blood	blood
34	chr9:100190400-100197600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr9:100190400-100198600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr9:100190400-100203800	Weak transcription	NHEK	skin
37	chr9:100190600-100196600	Strong transcription	Primary hematopoietic stem cells	blood
38	chr9:100190600-100196600	Strong transcription	HepG2	liver
39	chr9:100190600-100197600	Strong transcription	Primary B cells from peripheral blood	blood
40	chr9:100190600-100197600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr9:100190600-100197600	Strong transcription	Duodenum Mucosa	Duodenum
42	chr9:100190600-100200000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr9:100190600-100203800	Weak transcription	HMEC	breast
44	chr9:100190800-100195000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:100190800-100195400	Strong transcription	Left Ventricle	heart
46	chr9:100190800-100196400	Strong transcription	Brain Anterior Caudate	brain
47	chr9:100190800-100196600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr9:100190800-100196800	Strong transcription	Rectal Smooth Muscle	rectum
49	chr9:100190800-100197200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:100190800-100197200	Strong transcription	Liver	Liver

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