Variant report

Variant	rs73654702
Chromosome Location	chr9:100089032-100089033
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10119264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10124635	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335678	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12352173	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920253	1.00[AMR][1000 genomes]
rs2219663	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28441587	1.00[AMR][1000 genomes]
rs28508080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670234	1.00[AMR][1000 genomes]
rs57850084	1.00[AMR][1000 genomes]
rs57878624	1.00[AMR][1000 genomes]
rs58056009	1.00[AMR][1000 genomes]
rs6477964	1.00[AMR][1000 genomes]
rs6477965	1.00[AMR][1000 genomes]
rs6478007	1.00[AMR][1000 genomes]
rs7044096	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654663	1.00[AMR][1000 genomes]
rs73654665	1.00[AMR][1000 genomes]
rs73654684	1.00[AMR][1000 genomes]
rs73656821	1.00[AMR][1000 genomes]
rs7850714	1.00[AMR][1000 genomes]
rs7864805	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs970857	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762823	chr9:100083872-100105782	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100069400-100092800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:100069600-100094400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:100070000-100091400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:100070000-100093800	Weak transcription	Psoas Muscle	Psoas
5	chr9:100070000-100098000	Weak transcription	Small Intestine	intestine
6	chr9:100070000-100100200	Weak transcription	Fetal Heart	heart
7	chr9:100070000-100131400	Weak transcription	Fetal Kidney	kidney
8	chr9:100070200-100092600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:100070200-100095000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:100070400-100091800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:100070400-100092800	Weak transcription	Colonic Mucosa	Colon
12	chr9:100070400-100095200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:100070600-100089600	Weak transcription	Osteobl	bone
14	chr9:100071000-100094400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:100071200-100093000	Strong transcription	Stomach Smooth Muscle	stomach
16	chr9:100071600-100089200	Strong transcription	Fetal Intestine Small	intestine
17	chr9:100071600-100093000	Strong transcription	Fetal Stomach	stomach
18	chr9:100071600-100093400	Strong transcription	Brain Anterior Caudate	brain
19	chr9:100071600-100093800	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr9:100071600-100093800	Strong transcription	Ovary	ovary
21	chr9:100071600-100094600	Strong transcription	Brain Angular Gyrus	brain
22	chr9:100071800-100093400	Strong transcription	Adipose Nuclei	Adipose
23	chr9:100071800-100093600	Strong transcription	Left Ventricle	heart
24	chr9:100073000-100089200	Strong transcription	Brain Hippocampus Middle	brain
25	chr9:100075600-100089600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr9:100076000-100093200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:100076000-100093600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:100076200-100092400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:100077000-100106400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:100077000-100140800	Weak transcription	Fetal Brain Male	brain
31	chr9:100078000-100091800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr9:100078200-100091800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:100078400-100092800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr9:100079400-100089600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:100080400-100126400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr9:100082000-100092000	Strong transcription	Primary T cells from cord blood	blood
37	chr9:100082200-100091600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:100082800-100091400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr9:100083400-100091400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:100083400-100092600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr9:100083800-100091000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr9:100083800-100091400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:100083800-100098400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr9:100083800-100124000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:100084200-100089200	Strong transcription	Fetal Brain Female	brain
46	chr9:100084200-100093800	Strong transcription	Fetal Muscle Trunk	muscle
47	chr9:100084400-100093600	Strong transcription	Fetal Muscle Leg	muscle
48	chr9:100084600-100093600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr9:100085000-100091800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr9:100085200-100089200	Strong transcription	Spleen	Spleen

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