The 2.0 version of rSNPBase

Variant report

Variant rs28508080
Chromosome Location chr9:100126892-100126893
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:100070000-100131400 Weak transcription Fetal Kidney kidney
2 chr9:100077000-100140800 Weak transcription Fetal Brain Male brain
3 chr9:100086600-100132000 Weak transcription Thymus Thymus
4 chr9:100088200-100127000 Weak transcription Duodenum Mucosa Duodenum
5 chr9:100088600-100128600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr9:100088600-100132800 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr9:100089200-100128200 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr9:100090600-100133800 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr9:100091600-100149200 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr9:100099000-100132200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr9:100104400-100142000 Weak transcription Rectal Smooth Muscle rectum
12 chr9:100104600-100128200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr9:100105400-100127600 Weak transcription Primary hematopoietic stem cells short term culture blood
14 chr9:100105800-100128000 Weak transcription Brain Substantia Nigra brain
15 chr9:100106800-100128000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr9:100106800-100143200 Weak transcription Liver Liver
17 chr9:100107000-100131400 Weak transcription Primary hematopoietic stem cells blood
18 chr9:100107200-100130200 Weak transcription Fetal Lung lung
19 chr9:100107200-100138400 Weak transcription Placenta Amnion Placenta Amnion
20 chr9:100108000-100148200 Weak transcription Esophagus oesophagus
21 chr9:100110200-100132200 Weak transcription Primary T cells fromperipheralblood blood
22 chr9:100115400-100144600 Weak transcription Hela-S3 cervix
23 chr9:100115600-100139200 Weak transcription H9 Cell Line embryonic stem cell
24 chr9:100116000-100127600 Weak transcription HUES6 Cell Line embryonic stem cell
25 chr9:100116200-100130800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr9:100116400-100130800 Strong transcription Fetal Stomach stomach
27 chr9:100116600-100129200 Strong transcription Stomach Smooth Muscle stomach
28 chr9:100117400-100132400 Weak transcription Fetal Intestine Large intestine
29 chr9:100117400-100145000 Weak transcription Colon Smooth Muscle Colon
30 chr9:100117600-100130000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr9:100117600-100146400 Weak transcription Small Intestine intestine
32 chr9:100118200-100132400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
33 chr9:100118200-100141600 Weak transcription Primary T cells from cord blood blood
34 chr9:100118400-100127800 Weak transcription Pancreas Pancrea
35 chr9:100119000-100130800 Strong transcription Fetal Muscle Trunk muscle
36 chr9:100119400-100127200 Strong transcription Fetal Intestine Small intestine
37 chr9:100120000-100129200 Strong transcription Breast Myoepithelial Primary Cells Breast
38 chr9:100120000-100130400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
39 chr9:100120000-100137800 Weak transcription Primary T regulatory cells fromperipheralblood blood
40 chr9:100120400-100128000 Weak transcription Aorta Aorta
41 chr9:100121000-100129200 Strong transcription Fetal Muscle Leg muscle
42 chr9:100121200-100129200 Strong transcription Skeletal Muscle Male skeletal muscle
43 chr9:100121400-100129200 Strong transcription Brain Inferior Temporal Lobe brain
44 chr9:100121800-100128800 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr9:100121800-100137800 Weak transcription Gastric stomach
46 chr9:100123000-100127600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr9:100123200-100127800 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr9:100124200-100130400 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr9:100124600-100128000 Weak transcription Right Ventricle heart
50 chr9:100124600-100128400 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015