Variant report

Variant	rs16927536
Chromosome Location	chr8:62477302-62477303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10093414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10107557	0.84[CEU][hapmap]
rs10504327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10504328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10504329	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10504330	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13256758	0.86[JPT][hapmap]
rs13270887	0.85[JPT][hapmap]
rs16927347	0.84[CEU][hapmap]
rs16927446	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16927448	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16927460	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16927566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs17200553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17200623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17201182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17201219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17788825	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs17788873	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs17789341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17790020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs17790471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17790639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2279573	0.88[JPT][hapmap]
rs2610520	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2640232	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2640237	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4487757	0.84[CEU][hapmap]
rs59333700	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61252075	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73263176	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7830314	0.92[CEU][hapmap]
rs7839684	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1029046	chr8:62224341-62535277	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv1032489	chr8:62450784-62555994	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv539635	chr8:62450784-62555994	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62411000-62505800	Weak transcription	Brain Angular Gyrus	brain
2	chr8:62411200-62493800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:62414800-62503400	Weak transcription	Fetal Heart	heart
4	chr8:62430400-62487400	Weak transcription	Colonic Mucosa	Colon
5	chr8:62430600-62479600	Weak transcription	Brain Substantia Nigra	brain
6	chr8:62442600-62493200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:62449800-62503600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:62453400-62480200	Weak transcription	Primary T cells from cord blood	blood
9	chr8:62453400-62480800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:62456000-62482800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:62456000-62482800	Strong transcription	Adipose Nuclei	Adipose
12	chr8:62456000-62491600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:62456600-62492800	Weak transcription	Small Intestine	intestine
14	chr8:62456600-62503800	Weak transcription	Stomach Mucosa	stomach
15	chr8:62456800-62479400	Weak transcription	Psoas Muscle	Psoas
16	chr8:62456800-62482200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr8:62457000-62479600	Weak transcription	NHEK	skin
18	chr8:62457000-62496600	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:62457000-62503000	Weak transcription	HSMMtube	muscle
20	chr8:62457800-62488400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:62458000-62497000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:62458200-62482000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr8:62458800-62491000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:62459000-62479400	Weak transcription	Aorta	Aorta
25	chr8:62460200-62495800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:62463800-62479200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:62463800-62481200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr8:62464000-62480400	Weak transcription	Lung	lung
29	chr8:62464000-62492400	Weak transcription	Fetal Muscle Leg	muscle
30	chr8:62464000-62492600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr8:62464000-62494000	Weak transcription	HUVEC	blood vessel
32	chr8:62464200-62479000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr8:62464400-62492600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:62464600-62478200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:62465000-62479600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr8:62465000-62488400	Weak transcription	Colon Smooth Muscle	Colon
37	chr8:62465000-62488600	Weak transcription	Brain Anterior Caudate	brain
38	chr8:62466600-62490200	Weak transcription	K562	blood
39	chr8:62466800-62479000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr8:62466800-62508600	Weak transcription	Pancreas	Pancrea
41	chr8:62467200-62487400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr8:62467600-62492600	Weak transcription	Spleen	Spleen
43	chr8:62468600-62479000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr8:62468600-62479200	Weak transcription	Ovary	ovary
45	chr8:62468600-62479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr8:62468600-62549000	Weak transcription	Right Ventricle	heart
47	chr8:62469000-62479200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr8:62469000-62479200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr8:62469800-62478200	Weak transcription	Left Ventricle	heart
50	chr8:62470000-62484800	Weak transcription	Gastric	stomach

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