Variant report
| Variant | rs16930646 |
|---|---|
| Chromosome Location | chr9:13657353-13657354 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs12000174 | 1.00[ASN][1000 genomes] |
| rs12002484 | 1.00[ASN][1000 genomes] |
| rs16930577 | 0.85[ASN][1000 genomes] |
| rs16930626 | 1.00[ASN][1000 genomes] |
| rs16930665 | 0.84[ASN][1000 genomes] |
| rs16930668 | 0.84[ASN][1000 genomes] |
| rs16930675 | 0.84[ASN][1000 genomes] |
| rs60961071 | 0.81[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs61472956 | 0.85[ASN][1000 genomes] |
| rs7032707 | 0.84[ASN][1000 genomes] |
| rs7032959 | 0.84[ASN][1000 genomes] |
| rs73647695 | 1.00[ASN][1000 genomes] |
| rs73647696 | 1.00[ASN][1000 genomes] |
| rs73647697 | 1.00[ASN][1000 genomes] |
| rs8192959 | 1.00[ASN][1000 genomes] |
| rs8192966 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8192967 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8192968 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8192969 | 1.00[ASN][1000 genomes] |
| rs8192972 | 0.84[ASN][1000 genomes] |
| rs8192974 | 0.84[ASN][1000 genomes] |
| rs8192976 | 0.84[ASN][1000 genomes] |
| rs8192978 | 0.84[ASN][1000 genomes] |
| rs8192979 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023684 | chr9:13529680-13744602 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv540067 | chr9:13529680-13744602 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv892587 | chr9:13601074-13732363 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv1843958 | chr9:13631992-13706651 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13651600-13660800 | Weak transcription | Right Atrium | heart |
