Variant report

Variant	rs8192966
Chromosome Location	chr9:13660943-13660944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10491761	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10961209	0.84[EUR][1000 genomes]
rs10961212	0.83[EUR][1000 genomes]
rs12000174	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12002484	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923099	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16930577	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16930626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930646	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16930665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16930668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16930675	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16930694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16930712	0.92[EUR][1000 genomes]
rs16930740	0.84[EUR][1000 genomes]
rs60961071	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61472956	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7032707	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7032959	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73647695	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73647696	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73647697	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73650811	0.92[EUR][1000 genomes]
rs8192959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192961	1.00[EUR][1000 genomes]
rs8192967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192969	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192976	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192979	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8192980	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8192983	1.00[EUR][1000 genomes]
rs8192985	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8192992	0.92[EUR][1000 genomes]
rs8192997	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1843958	chr9:13631992-13706651	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13659600-13661000	Weak transcription	Psoas Muscle	Psoas
2	chr9:13660800-13661000	Active TSS	Adipose Nuclei	Adipose
3	chr9:13660800-13661000	Flanking Active TSS	A549	lung
4	chr9:13660800-13661200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:13660800-13661200	Active TSS	Duodenum Mucosa	Duodenum
6	chr9:13660800-13661200	Active TSS	Left Ventricle	heart
7	chr9:13660800-13661200	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr9:13660800-13661200	Enhancers	Rectal Smooth Muscle	rectum
9	chr9:13660800-13661200	Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr9:13660800-13661200	Active TSS	Hela-S3	cervix
11	chr9:13660800-13661200	Active TSS	NHLF	lung
12	chr9:13660800-13661400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:13660800-13661400	Active TSS	Right Atrium	heart
14	chr9:13660800-13661600	Enhancers	Colon Smooth Muscle	Colon

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