Variant report

Variant	rs16923099
Chromosome Location	chr9:13686717-13686718
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10491761	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961209	0.90[ASN][1000 genomes]
rs10961212	0.91[EUR][1000 genomes]
rs12000174	0.84[EUR][1000 genomes]
rs12002484	0.84[EUR][1000 genomes]
rs16930577	0.84[EUR][1000 genomes]
rs16930626	0.92[EUR][1000 genomes]
rs16930665	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16930668	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16930675	0.91[ASN][1000 genomes]
rs16930694	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16930712	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930740	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59927131	0.91[ASN][1000 genomes]
rs60961071	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61472956	0.82[EUR][1000 genomes]
rs7032707	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7032959	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73647695	0.84[EUR][1000 genomes]
rs73647696	0.84[EUR][1000 genomes]
rs73647697	0.84[EUR][1000 genomes]
rs73650811	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8192959	0.92[EUR][1000 genomes]
rs8192961	0.92[EUR][1000 genomes]
rs8192966	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8192967	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8192968	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8192969	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8192972	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8192974	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8192976	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8192978	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8192979	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8192980	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8192983	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8192985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192997	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1843958	chr9:13631992-13706651	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892588	chr9:13667639-13715063	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13685000-13688000	Weak transcription	Fetal Heart	heart
2	chr9:13685200-13688600	Weak transcription	Aorta	Aorta
3	chr9:13685200-13688600	Weak transcription	Right Atrium	heart
4	chr9:13685200-13688600	Weak transcription	HUVEC	blood vessel
5	chr9:13686000-13688600	Weak transcription	Left Ventricle	heart
6	chr9:13686000-13688600	Weak transcription	Psoas Muscle	Psoas
7	chr9:13686200-13687800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr9:13686400-13686800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr9:13686600-13687000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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