Variant report

Variant	rs73650811
Chromosome Location	chr9:13724763-13724764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10491761	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10961209	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961212	0.91[EUR][1000 genomes]
rs12000174	0.84[EUR][1000 genomes]
rs12002484	0.84[EUR][1000 genomes]
rs16923099	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16930577	0.84[EUR][1000 genomes]
rs16930626	0.92[EUR][1000 genomes]
rs16930665	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16930668	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16930675	0.82[ASN][1000 genomes]
rs16930694	0.92[EUR][1000 genomes]
rs16930712	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16930740	0.90[ASN][1000 genomes]
rs59927131	0.82[ASN][1000 genomes]
rs60961071	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61472956	1.00[EUR][1000 genomes]
rs7032707	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7032959	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73647695	0.84[EUR][1000 genomes]
rs73647696	0.84[EUR][1000 genomes]
rs73647697	0.84[EUR][1000 genomes]
rs8192959	0.92[EUR][1000 genomes]
rs8192961	0.92[EUR][1000 genomes]
rs8192966	0.92[EUR][1000 genomes]
rs8192967	0.92[EUR][1000 genomes]
rs8192968	0.92[EUR][1000 genomes]
rs8192969	0.92[EUR][1000 genomes]
rs8192972	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8192974	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8192976	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8192978	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8192979	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8192980	0.92[EUR][1000 genomes]
rs8192983	0.92[EUR][1000 genomes]
rs8192985	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8192992	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8192997	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1032702	chr9:13723812-13760986	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13717600-13728000	Weak transcription	HUVEC	blood vessel
2	chr9:13718200-13727400	Weak transcription	Fetal Brain Male	brain
3	chr9:13720800-13729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:13723000-13726600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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