Variant report

Variant	rs61472956
Chromosome Location	chr9:13612617-13612618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10491761	0.92[EUR][1000 genomes]
rs10961209	0.92[EUR][1000 genomes]
rs10961212	0.91[EUR][1000 genomes]
rs12000174	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12002484	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16923099	0.82[EUR][1000 genomes]
rs16930577	0.84[EUR][1000 genomes]
rs16930626	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16930646	0.85[ASN][1000 genomes]
rs16930665	0.92[EUR][1000 genomes]
rs16930668	0.92[EUR][1000 genomes]
rs16930694	0.92[EUR][1000 genomes]
rs16930712	0.82[EUR][1000 genomes]
rs60961071	0.92[EUR][1000 genomes]
rs7032707	0.92[EUR][1000 genomes]
rs7032959	0.92[EUR][1000 genomes]
rs73647655	0.92[ASN][1000 genomes]
rs73647695	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73647696	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73647697	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73650811	1.00[EUR][1000 genomes]
rs8192959	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192961	0.92[EUR][1000 genomes]
rs8192966	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192967	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192968	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192969	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8192972	0.92[EUR][1000 genomes]
rs8192974	0.92[EUR][1000 genomes]
rs8192976	0.92[EUR][1000 genomes]
rs8192978	0.92[EUR][1000 genomes]
rs8192979	0.92[EUR][1000 genomes]
rs8192980	0.92[EUR][1000 genomes]
rs8192983	0.92[EUR][1000 genomes]
rs8192985	0.82[EUR][1000 genomes]
rs8192992	0.82[EUR][1000 genomes]
rs8192997	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1017792	chr9:13529680-13654107	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1026786	chr9:13530105-13627116	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892586	chr9:13601074-13621142	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13608000-13617800	Weak transcription	Left Ventricle	heart
2	chr9:13608800-13615200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:13608800-13615400	Weak transcription	Fetal Stomach	stomach
4	chr9:13608800-13617800	Weak transcription	Psoas Muscle	Psoas
5	chr9:13609000-13616400	Weak transcription	Fetal Heart	heart
6	chr9:13609200-13614200	Weak transcription	Fetal Lung	lung

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