Variant report

Variant	rs10961209
Chromosome Location	chr9:13728920-13728921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10491761	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10961212	0.83[EUR][1000 genomes]
rs16923099	0.90[ASN][1000 genomes]
rs16930626	0.84[EUR][1000 genomes]
rs16930665	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16930668	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16930675	0.82[ASN][1000 genomes]
rs16930694	0.84[EUR][1000 genomes]
rs16930712	0.90[ASN][1000 genomes]
rs16930740	0.90[ASN][1000 genomes]
rs59927131	0.82[ASN][1000 genomes]
rs60961071	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61472956	0.92[EUR][1000 genomes]
rs7032707	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7032959	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73650811	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192959	0.84[EUR][1000 genomes]
rs8192961	0.84[EUR][1000 genomes]
rs8192966	0.84[EUR][1000 genomes]
rs8192967	0.84[EUR][1000 genomes]
rs8192968	0.84[EUR][1000 genomes]
rs8192969	0.84[EUR][1000 genomes]
rs8192972	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8192974	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8192976	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8192978	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8192979	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8192980	0.84[EUR][1000 genomes]
rs8192983	0.84[EUR][1000 genomes]
rs8192985	0.90[ASN][1000 genomes]
rs8192992	0.90[ASN][1000 genomes]
rs8192997	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1032702	chr9:13723812-13760986	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13720800-13729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13727200-13730000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr9:13727200-13730200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr9:13727400-13729800	Enhancers	Fetal Brain Male	brain
5	chr9:13728000-13729800	Enhancers	Psoas Muscle	Psoas
6	chr9:13728200-13729200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:13728200-13729200	Enhancers	Right Atrium	heart
8	chr9:13728200-13729400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:13728200-13729400	Enhancers	Esophagus	oesophagus
10	chr9:13728200-13729800	Enhancers	Fetal Muscle Leg	muscle
11	chr9:13728400-13729600	Enhancers	Right Ventricle	heart
12	chr9:13728600-13729000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:13728600-13729600	Weak transcription	Fetal Brain Female	brain

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