Variant report

Variant	rs16930740
Chromosome Location	chr9:13708250-13708251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10491761	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961209	0.90[ASN][1000 genomes]
rs10961212	0.83[EUR][1000 genomes]
rs16923099	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16930626	0.84[EUR][1000 genomes]
rs16930665	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16930668	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16930675	0.91[ASN][1000 genomes]
rs16930694	0.84[EUR][1000 genomes]
rs16930712	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59927131	0.91[ASN][1000 genomes]
rs60961071	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7032707	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7032959	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73650811	0.90[ASN][1000 genomes]
rs8192959	0.84[EUR][1000 genomes]
rs8192961	0.84[EUR][1000 genomes]
rs8192966	0.84[EUR][1000 genomes]
rs8192967	0.84[EUR][1000 genomes]
rs8192968	0.84[EUR][1000 genomes]
rs8192969	0.84[EUR][1000 genomes]
rs8192972	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8192974	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8192976	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8192978	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8192979	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8192980	0.84[EUR][1000 genomes]
rs8192983	0.84[EUR][1000 genomes]
rs8192985	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192992	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192997	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892588	chr9:13667639-13715063	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv892589	chr9:13689066-13715328	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv892590	chr9:13689066-13777299	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13705400-13708800	Enhancers	NH-A	brain
2	chr9:13706200-13708400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:13707400-13708400	Flanking Active TSS	HUVEC	blood vessel
4	chr9:13708200-13716600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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