Variant report

Variant	rs16930675
Chromosome Location	chr9:13672541-13672542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10491761	0.91[ASN][1000 genomes]
rs10961209	0.82[ASN][1000 genomes]
rs12000174	0.84[ASN][1000 genomes]
rs12002484	0.84[ASN][1000 genomes]
rs1556493	0.81[EUR][1000 genomes]
rs16923099	0.91[ASN][1000 genomes]
rs16930577	0.84[ASN][1000 genomes]
rs16930626	0.84[ASN][1000 genomes]
rs16930646	0.84[ASN][1000 genomes]
rs16930665	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16930668	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16930694	0.89[AMR][1000 genomes]
rs16930712	0.91[ASN][1000 genomes]
rs16930740	0.91[ASN][1000 genomes]
rs59927131	0.82[ASN][1000 genomes]
rs60961071	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7032707	1.00[ASN][1000 genomes]
rs7032959	1.00[ASN][1000 genomes]
rs73647695	0.84[ASN][1000 genomes]
rs73647696	0.84[ASN][1000 genomes]
rs73647697	0.84[ASN][1000 genomes]
rs73650811	0.82[ASN][1000 genomes]
rs8192959	0.84[ASN][1000 genomes]
rs8192966	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8192967	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8192968	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8192969	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8192972	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8192974	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8192976	1.00[ASN][1000 genomes]
rs8192978	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8192979	1.00[ASN][1000 genomes]
rs8192985	0.91[ASN][1000 genomes]
rs8192992	0.91[ASN][1000 genomes]
rs8192997	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1843958	chr9:13631992-13706651	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892588	chr9:13667639-13715063	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13665800-13675800	Weak transcription	Left Ventricle	heart
2	chr9:13672400-13673200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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